RNA id: XM_039781019.1


Basic Information

Item Value
RNA id XM_039781019.1
length 4183
RNA type mRNA
GC content 0.47
exon number 12
gene id LOC120546233
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22438721 ~ 22450064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCACTCGTTGCGCGTCCTTATAATTTGGAGAGGTGTATGCAGCGCACGGTCCGTTCAACTTTCCAGGTGGAAATCCAGGAGGAGCAGAGACCAAACTTAACTGGGACGACTGGTGAACCCGGATCAGGACAGgtCATGGATGAGATCCCGCGGCAGCACCTTTACGGTTTAACTACAACCAGTTGAAGTATCACTGCCCGCCATCAGGAGTAGGCAACCAGGGatattcacatttctttttGGATTCAACTGTTTACATTaaaactccacatttttttagttgataAAAATCTGCAATGAAAAGGAGTCAAGGTGGAGAGGAATCAGCGAAACTGCTGATTTGAATGCCCACCCTCTCAGACAAGGAAGGATACAGTGAAAAGGCGCCGAAATGAAGGAGAAATCCAAAACGGCAGCAAGGACTAGACGGGAAAAGGAGAACAGCGAATTTTATGAACTGGCCAAAATGTTGCCTTTACCTTCGGCCATAACCTCACAACTGGACAAAGCCTCCATAATAAGACTGACAACGAGTTACCTGAAGATGAGAATTGTTTTCCCTCAGGGTTTGGGTGAGGCTTGGGGTCATACAAGTCGAACAAGATCTCTGGACAATATTGGACGAGAGCTGGGATCTCATTTGCTGCAGACGTTGGACGGATTCATCTTTGTTGTGGCTCCAGATgggaaaataatgtacatttcagaaacaGCGTCGGTCCATTTAGGACTGTCTCAGGTAGAGTTGACTGGGAACAGTATTTATGAATATGTACATCCTGCCGACCACGACGAGATGACAGCTGTGCTGACGCCACATCAGCCATATCACTCACATTTCGTCCAAGAATATGAAGCAGAGCGCTCTTTCTTTTTGCGGATGAAATGTGTGCTGGCAAAAAGAAACGCAGGCCTCACCAGTGGTGGATACAAGGTGATCCACTGCAGTGGCTACCTGAAGATCCGTCAGTACAGTTTAGACATGTCTCCTTTTGAGGGCTGCTACCAGAACGTGGGTTTGGTGGCTGTGGGTCACTCCCTGCCTCCCAGCGCTGTGACCGAGATCAAACTGCACAGCAACATGTTTATGTTCAGAGCCAGTTTGGACATGAAGCTCATCTTCCTGGACTCCAGGGTGGCAGAGCTGACAGGTTATGAGCCCCAGGACCTGATAGAGAAAACCCTGTACCATCACGTCCACAGCTGTGACATCTTCCACCTCCGCTGTGCACACCACCTCCTGCTTGTAAAAGGCCAAGTTACCACTAAGTATTATCGTTTCCTGGCCAAGCACGGCGGCTGGGTCTGGGTCCAGAGTTACGCCACAATCGTCCACAACAGCCGGTCCTCAAGACCTCACTGTATAGTCAGCGTCAACTATGTCCTCACGGATACTGAGTATAAGGGAATGCAGCTGTCTTTGGACCAAATGAGCCCCACCAAGCCAGCCTTCCCCTACGCTGACAGTCACAGTGAAGACAGGAAGAGCACCAAGTCACGTCTGACCCAGACGAAGGCCAAAGCCAGAGTGTCACCCTACCCACAGTTTTCAGCTTTCAATCCAGAGCGTTCAGAGTCAGACCAAGACAGCCAGTGGGGAGGCAGCCCGCTGACAGACTCTGCTTCTCCTCAGCTGCTGGATCCCGGCGAGGCTGCGGAGGCATCTTGTGCCTACCGACTGTATCCAGACTCAGGCTCCCTGTGCTATGGCCTGGGTCTATCAGAGGACGATATCACCCATGACCAAACACATCCTCACACCACCACCTGTGACCGCGTGCGATGTCAGAGCGGCCGCTACTTCCTGGGAACCCCCCAGTCAGGAAGAGAAGTGTGGTGGGATGCCACGCGCTCTGTGCTCTCGCTGCCAAAATCTTCCAACGACAACAGCGAGGGCTACGAAATCACATCCTACCATGGAGCCATTCACGGACGGGGCCACTGGGATGAAGACAGTGTAGTGAGTTCACCTGATGGAGGCGGGTCCACCAGTGATTCAGGTGAGCGTTACCATGGTGACCACTTCCGGGCAACCCCTCGAGAGCCCAGCAAGATGGAGACCCTAATCCGAGCCACGCAGCAGATGATCAAAGAGGAAGAGAGCCGCCTGCAGCAACACAAGGTGCCGCTGGACGTCTCAGGCCTCGCCAAAGCCCACAGCCCGTGCTTCACCTCCTCACTATCGCACCACTCCCAGCTCACCATGCCCAGCGTGGTGTGCCGTGGCCCGGGAGCCCCCAGCATCGACCTCCCCTCTGAACGTCTCCATCATCGGGACAGCGTCAAAGTGCTCGGTCCGCACGACAATGACGAAAACACAACCAGTCCGGCCTCTCTGTCTCGTCTCAGCAGCCCCAGTTCTGATGGGATCCCCAGGTCTGGCCTCTCCCTCACCAAAGACTACATGCAGACAGATCTGTCCCCCCACCCTCCACAGCCCCAGGGGAGCCCACTGCTCTATCAGGCCCAGGAGAGGCAATCACTGGACAGGCAAGCAGCCTATGCTTTGACTGGATACTCCCTGGAGCACCTGTATGACCCGGAGAACCTGCGGAGTTATTCAGGCCTGGCCTGTGGAGGAGTCCAGTATGATGTGGCGTCCCATGTGAGGATGCAGGCCGAGCAGATGCAGGGACACAAGGCCACTTCAGTTATCATAACCAACGGGAGCTGACGATATCTGGTGCAGATAGTTCCTGTTCTCTAGATGAGGATGTTACAGTAAGGGGGTGCTTTATGCACCTGCAAACACCGACCAGGTGCTTGATACAAATGGCCagacaatagaaaaaaaagaataaaaaggtaCCTGCACTGGGTTGATGCACCCTTGGTGGCTCATGCACAATTTGTGTTTGTCAGCCTTTGTATCATACCATTATCTTTTCTATATCATCGGAGGATGATTTGAACTACTGTCCAAGAACTGACATTTGGTCTGCCACTTCCCAGAGTGGAGGTTTGCTCCATTAGTTAGGGATATAGTGTTATTTTAATGGTGAAATAAATTCCCCTCCTTGCAAAGGCGACCTAAGTTTTGAGTCTGGTTAAACATCAAGCCAGTGTGCCTCACGCACCATTGGCCATGTGAGTTAATCTGTCCCGGACACTATTTCCAAAGGCAGTATGAAAATGTGTTGTTCCATTGCCCCTTCACCTGAAAACTCCATTGCGCAGAGAATAATGTTTGACACAAGAAGTGCAACATGGGAAAGGCGAGAGTTTCACTATTGTAAGATGTCAATGTTTCCTGTTATTTATTTGTCAGTGGGCTGTTTTCTCTATGTGCCATTTTTTTCTGTCCAAGTAGAATCTTTATTGGTCGCATaagatttgttttggtgtttggaTTACACCAACATTagattaaaaaatgaaatgaagtggaaaaacagaaagaaaaaatgcTTCTGAtatgtaaaagtgtaaaatatgCAGGTCaactttaaactgtttaaatgtgaAATGCCCTTACTTAGAGCGCAAAGAGAGAACCCAAAACACATTTGTAATCTCCCCATGCCCTCTAAATATAGGCATTGTATATATTGACTTAAGTTGTGCCTGAAACAATATTATTTACATATCAGAGTATAATTTTCCCAGTTTTTTACCTCACTTAACTGTTACCCAAGTTATTAGCATATGTAGAGTATGCTTTTAAATCCCTAAATCCTGCTCCACATGTAATTGTTCTCAAAGAAAAccatttgttttagtttttgttatgacaaatataacaaatacaattgaaacAGACTTAATAAGAATGTGTTTAATGTCTTTAGTTTCTTATTTAATTTATGCTGTAAATATCATCTCACAATGAACTTTTGAACAAGAAGTGACAAGATTATTTATTAACTGGTTTTAAAGTCTTGAATCTGAATACAGTTGCAAACCAACAACTTCTGTCTCTGTTGATTTTTGTCGCACAACTCTtatctggaaaaaaaagtgctttGAATGAATTTGCCCACAACTGCCGCCTCAGAAAAACTCCATAACAATTTTAGACATATTGGAGATAAATGTAGCTGTTGTTCATCCATCGTGAACAACCAGGACAGCTTTGTACAATGCATTTTGAGAtgtatagatatagatataaatATTAAGTTAATGAGTTAATTTTTATTTCTGTATAATGACAAGTATTTGGCCCATCCCCAGCCATTTAG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252572 lncRNA upstream 137238 22300784 ~ 22301483 (+) False lin28b
TU252574 lncRNA upstream 144024 22294442 ~ 22294697 (+) True G186452
XR_005637027.1 lncRNA upstream 604939 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 692167 21745581 ~ 21746554 (+) True LOC120546760
TU252261 lncRNA upstream 895940 21540588 ~ 21542781 (+) True G186297
TU252644 lncRNA downstream 85595 22535659 ~ 22537716 (+) True G186506
TU252735 lncRNA downstream 266906 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 349671 22799735 ~ 22800058 (+) True G186622
TU252810 lncRNA downstream 359156 22809220 ~ 22809461 (+) False kcns3b
TU252843 lncRNA downstream 396808 22846872 ~ 22847674 (+) True G186641
XM_039782705.1 mRNA upstream 137136 22280967 ~ 22301585 (+) True lin28b
XM_039782707.1 mRNA upstream 137136 22280967 ~ 22301585 (+) False lin28b
XM_039782706.1 mRNA upstream 137136 22280967 ~ 22301585 (+) False lin28b
XM_039782708.1 mRNA upstream 137136 22280967 ~ 22301585 (+) False lin28b
XM_039781600.1 mRNA upstream 167974 22258597 ~ 22270747 (+) True LOC120546584
XM_039781294.1 mRNA downstream 31856 22481920 ~ 22484901 (+) True LOC120546368
XM_039781291.1 mRNA downstream 38982 22489046 ~ 22515691 (+) True LOC120546366
XM_039781290.1 mRNA downstream 40610 22490674 ~ 22515691 (+) False LOC120546366
XM_039781292.1 mRNA downstream 40610 22490674 ~ 22515691 (+) False LOC120546366
XM_039782495.1 mRNA downstream 91342 22541406 ~ 22553765 (+) True LOC120547088
TU252499 other upstream 373132 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 491721 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2578516 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2790565 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 2899513 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 1128314 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1128314 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1629539 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 2056849 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2553955 25004019 ~ 25009407 (+) False lama2

Expression Profile