RNA id: XM_039781479.1


Basic Information

Item Value
RNA id XM_039781479.1
length 6568
RNA type mRNA
GC content 0.46
exon number 20
gene id znf106b
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22860808 ~ 22875214 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCTCTTTAGCTAACGATTGGCCAACGTAAACATAACGCAATGTACGTAAGCAAACATGGCGGATGAGTTGCAGTTGAGTTTTGTTGCCATGTGAAATTTGTCTGAAATGGCACAGGTTCAAAACCCACGTGGTAAGCTGGGCAAAATGCccgtgaagaagaagaagaagaacaacccACAGTCCTCCAAGAAGGCCAAAATAAACTACTGTATTTTGTGTCGCAGGTCCCATTTGAAAATTGAAGCACACGAGCATGTGCATGGTATGCTGCATCACAGAGAGCTGGAGACAGTGCTGGGCAAGGATTCATTTCATGAATGTCAGGCGTGTAAAGCATCCTCCATGGGCTTAAATGAGTATGCTCAGCACATTTCCACTGCGCAACACAAAGCCAAGTTGAAGAGTTTGATTGCTAAAAATATAAAGCCCATCTCTCTGTGTAAGACTCTGAGCAAAGAGACCATGGCccggatcttggagagaaacaAGACACTAAAAAAAGAGAAGAAAGTAAagggcaagaaaaaaaagaaacagaagcaAGTAGCTGGTCAGCGTGCAAACATGCAACAGGGAGCCAGCAAAAAAAATGAAGTGATGTCCAAACAAGTGAAGATGAGGAGACTGCAACAGGAAACCTACCAGCAAGGAGGAAACAATGCTGTTGTTCAAAACAAAGAGAATAAAGTGTCCAGTCTGCAAAAGCCTCTTCACCAAAGAGAACCAACTCTGCAGAATCAAAGCGGAAGATTGCCTTGTTTGTCAGGAGAGCCTGCAGGTCAAACTCGTCATTACCCTCAGGTTCGAGACCAGTTCACCCAATCAGCTCAGCAGCTAAGGTATGATGAAAACTTTTCGGTCAAAATTGAGAGCTCCCAAACAGGCAGACTTGTTAGAAGACCAGACAACACTCAAGCAGGTGCCGCTAACAAGCCAGGAAGAACAACATGGCCTACCATCAGCCAGAATGGCTATTACAACCAGCAATACGATGGAGACTTCACCAGTGATCACCTTCCTCATAATGGAGCCATCATCTTCGTTCATGACCAGAATGAGAGTACGGGATCTACTCAGCCAGAACAAGAATGTTCAGCTCAACCCGCTTCAGCAAACGGATCCGCCAACGCAGCTCCCATACGGGATGTCGACGTTAGTGCAATGCTACGGCAAATCAGGAGAGCGCTGGGCGTGAGGGAGCCGTGCAGAGCCGACCGTGAAGCCCGGAAGCAGAACAGTGATGTAGGTGTCCGGGGGGCTGATCGCTGCACCACGCAACAAGCTGGAGctgagagagagcagcagacaGGTGGCTCCTTTAGGAACAATGTCAAGAAGGCTGCACTTCATATCACCTCTGCTGCAGCTACACCTGTGCAATCCTCACAGGTCAACAGCACTGCTCCCTCCAATATTGCTCCTCCTAAGCCAAAGCAGACAACATTCAAAATGACACAAGGAACAACTCAGAATTGTGAGAAGAGCTCAGTGTTTGCAAGTAACTCAAATGGACCATCAAACAGCAGGGAGGGAGAATCTCAAGGGACCCTCGACAGCCAGTGCTCGACCACATCCTCTGAGCCCAACCTGAACATCACCCGAAAGGTTCGAATTGCCCATGACTTAGCCAAAGTTCAGGGGGGAAAAGAGGCTAGGCTTAAACCAACACTGAATAAAATGTTCAGCTTATCAGGGGCCAAGAGTAAGTCGAACTGGAGGACGATATATGAGGAGACGAAAAGGAAAAAGCAGGAAAGGGGCAAAGGCACCCCCAGGTTTGGAATTAAGTTGGCAAACCCTCTGTCTGACCAAGAAAGCTCAACACACGCAAAGGACAATGACATAAGTCTGTCAGAAGGCTTCCACTGGGAGTCGTTCCCAAACAGTCCTTCAGGTGCGCACTGGACCAAACTAGCTCCTCCGCCCCAGGACACAGCAAATAATGACTCTCGCCCAGAAACCCAGTCAGATTCTGAGCTGCTGGAGCCTTCGGAGCAGCCTGGTGCAGCACTGGAAGGCTGCAGCAGTCAGACAGTCGAAGCTCTCTCTGTGAAGGTGGAGCCAAACTTGGAGGATGAGAATGGAGATATGAGAGCCAACAGTAGTGCTAGCAAGAGGAAACACAACAGGAACGATGGCATTTCTGATAAGGAGCCaagtggaaaaaagaaaaaaacaaagtcaaaCAAAGACCAGAGCCAAATGGACCagcttctgtctgtgtctctgaggGAGGATGAGCTGAGCCACTCCTTGCAGGATCTGGACAAGTCTCTGGTCCAGGCTCGCAATGCCCTGCAAGCTGCCTACACAGAAGTCCAAAGACTCCTGCTATTGAGACAGCAGTTTACTGCTGAGGTCAACAGTCTGAGAGCCCAGCGCATCGAAATCCTGCAAGGGATGCAAGGAGGGTACACAGGTGCATCTAATGTAGCAGAGAAAGCCCCCACCTCATCAGCAGGAGCTAATGCTAGCGTGCAGCCAAGCCTCTCTCCCCTTCCTTCCTTTAGTGCTTTCCCGACCTCCTACAGCCAGCAACAATCTCCTACAAACCAAGCATCTTCCATTAGCCCCCTTGCCCTGCCAACCATGCCAGTAAAGCAAGAAATATTCCAACTATCCCCAGCTGGACAGGCTAGTCAATTTTCCAAAACATTGTCCTGTAACTCTGATACACTTCAAATACCTGCAAGCCAACCTGTACCCTTGTTTCCCTCTGATTTGCTCCCTTCACTGCTGCATCAGTCACCACACTTAGCTGCTCATACAACTGCTGTTACCCCTCTCAAACCACTCAAAACAGAGTGCTCTACATCAACAAATGATTTCCCTGAATCATCTGCCGGGCAACAGACAGTGAGGATGTCAGCTGACCCTGATTCTGAGGAAGAGATGGGAGGAAATCTCTGCATAGaacaaattaaagaaaaagagCCAGCAGCAGAGAAGCCAGTGTCCACGTTTGACCCCAAAACAGGTCAAAATGCATCTGCTGCAGCACCAGACGACGATGGAGGGAACGAGAGCGACGACTCTGTCAAAATGGTGGAGCCCTCCGGCCTGGTAGTCATCGACATTGATGAATCGGACAATGAGGATTCACCAAATGTTCCGGTCCACCGAGAGCCTCCTCAGAAGTCAGTCAGTGTGGAGTTCAGTTCTTTAAGCACACAGACGTTTCAGCAAAATTACGTTGAGAGAAAAGTTCAGCCCACGTTTGTGCCAGTTGACGTGGGCGAGGATGAGGAGCCGTCCGTGGGATCTTTTTTCAATCACACAGGCCCCGTCCACGGCCTCCATGTTCACGAGGGTCGGTTGTACACATGTTCAGGGGACAACACAGCACGGGCCTACAGTCTGATGACCAGGGAATGCCAAGCAGTATTTGAGGGTCACACAAACAAAGTCAACTGTCTGCTGGTGTCGTCGCTCCCAAACATGCCGTCACGCCTCTACACCGGATCCAGTGACCAGACTATTCGCTGTTACAGCATAAAGACCACAAAGTGTCTGGAGCAGATCTCTCTCTCAGACAGAGTGTTGTGTTTGCACATTGCCTGGAACAGCCTGTATGCTGGACTCGCCAATGGATCAGTGGCTAGCTATGAGTTAAAGACTCTGAAGAACTTAGATGTGCTTGAGTGCCACGGCCCGCGAGGTGTGAGCTGTCTGGGTACAGCACAGGAGGGCGCCCGCCGAGTGCTGCTGGTTGGCTCCTACGACAGCACCATCAGCGTACGAGACGCCAAGAGTGGCCTGCTGCTGCGCACGCTGGAGGGTCACACCAAAACTGTACTCTGTATGAAGGTGGTGAATGACTTGGTCTTTAGCGGCTCCAGTGACACATCTGTTCATGCCCACAACATCCACACGGGTGAGTTGGTTCGTATCTACAAGGGTCACGATCATGCTGTCACATCAATAGTGATCTTAGGGAAAGTGATGGTGACAGCCTGTCTGGATAAACTGGTCCGAGTTTATGAGCTACAGTCCCATGACCGCCTGCAGGTGTACGGGGGTCACAGTGACATGGTGATGTGCATGGCCGTACATAAAAGTGTGATCTATACAGGCTGTTATGATGGCAGTGTTCAAGCTGTGAAGCTCAACTTGATGAAGAACTACCGCTGCTGGTGGCAGAATTGCGCTCTGATCTTCGGCATGGCGGAGCATCTTGTACAGCACCTTGTCAGAGATCACAGCAACCCCAATCTGCAAGCGGTCAAATGTCGCTGGAGAGGCTGCAGCACATTTTTTGGCACACAGCAGTCTGTTAAGCAGAAATTGCCTGAACACATGCAGAGACACGTGGAGAATGACAGTACAATACAGCCTTGACAGCAGGGGTGGTGAAGTGATGCAGCAGATTAAGTTGGAGTCGTGTTCATTATAATACATCAgctgatttctttttgtttcaaaGTTCTTTTCAGGGTGTTGTTTTCCGTTAGGagatcattcatttattttctagCTATTGAGGTGCTGATTACATCTCGTTGGTCTCGTGCATATTGTATAGTCTCTGTGATGGTGAGACGAGACAAGCTACTGAAGCTGTTGTGACATGACTGAGACATTCAATCTTACACACTCAATCAGTCCTGCTCTATAtatctatttatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatataatttttgttGTCACAGTGAATGCATGCCATGGCTGTATACACCATCAAATATATTATACAGTAACCCTCTTCAGATATGTCATAAGTATATGTGAAACTAATTATTCAGAACATTTCTACAACGATGCTGCACTGGCATACACAGCTCGGAGTAGCTTTTGTGTTAACTGCCTTCAGAATCGATcttgtttaaatttgttttggctattGACTCTGAAGTGGAGGTAACAGgttttaataatgtttaaaTCTGTCAAAGAAGAGCAAAGTAGAAATGTCAGTGTCTAAACCTAAACAAAATTAACTTGGTTATACATCAAATCTTAACACCCAGTTTGCTTGTCCTGCTGCACTCAATAGTTATTTCATATATTTAAGATTTAGCATTACGCTCCTGTCACTGTCACGTTGTCGGACTCACGATGGACAATTCCATCAGTCGTCAAAATCGATGCAGCAGATGCAGAGATATTCTCTTTATTCCATCCGTTGGTCTTCCTCGTAAAAACCTGGTACCTACAatacccataatgcaactcaaccACCGCAGATTTAGGTGTGTTGTGCTAGTAGTGGCTAATGTAGCCTCGAGGCGCTAGCCTCATGCAGAGATGAGGAGCtgctacagaggtctggtaagctCACCTTtttctagtctcgcattgcgagacctatctccacagcgctgtgtcagagctggagtatggtctggctatacgcttatctattctgggatagggggaaAAATGCTCTGccttgtttgtattgttttaaaccaatcacaaccttcCTGGGCAGCACTAAGCCCCGGGTGCAGTGACGGTGtccttgcaaaatagatagcagAGATCGGGAAAGGGAAGGacgtcaggctttatcccagcactgTACATCCGGTGAGCCAGACTAACCTCTAACTCCTCACCCTTTCCACCCCCAGCTAAAAccgactcaagtgacatcactttcACGCAGCTCTCTGGAGACATACACGTTTTATGCAACTTGTCTTTACATAAACAGGAGTACAccccaagacctgtaaacagactGATGTACATTGGTGGAGTTCGCCTTTCAAAGATGATGTAAAAGTTTCTGAAATTTCCATAACCTCAGACATTAAGGATCATTCTTGGTAATTTTAGAAGGGGTGGGCTCTGAGGATTTTCAAATCCTTTCtagtttttcaaaagttttgTTCTAAGATTGTCCTCACTTCAGTGTGGAAAGGGACGATGGCTCAGATGTAAAAATAAACAAGCTTAACTTGCTTGTATACTATATTATTTATAGAAGGTGCAGTTTGGGAAGTAACTGCAGGGTTTAAAAGCCATAGGCTAATATTTAGCAATCTGTACCTTCCGTATAAAGAATAAAATTTGTATCTTTACCCGCCTGCTTTTAagtcagattttattttttttttattggaaaatagttaTTTTTCCTGATATCACAGTGTAAAGACAATGTATCTTCAATTACGTCCTGGCTTTGTTACACTTGATAACTATAAAATGAATTCTTTATGTCGACAGAGGTTTGGTTATAAAAGGAGTACGTTTTGCATCATTACATATATAAACCATCTGTTAAATTATaacttttacattttcacatttcccAGAGAGTTATTCTCGGCAATGTGCTTTCCCCCTGTACAACATGTATTTGAGAAAACTTATTTTGTTCAATGGATAAAGTACTGTAGTAGTGAAAGTTGTCAGATCAAACTGGCCAGAGAGTAACTTCTAAGAGTGCTGTATTTAAGTCATGCCTTAATTTTTGTATGTTCTACTGTACAGTGTGCATTTGATTTGTGTTTAAtacctactgtatgtgtacagcaataaaaaatacaaataa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU252843 lncRNA upstream 13134 22846872 ~ 22847674 (+) True G186641
TU252810 lncRNA upstream 51347 22809220 ~ 22809461 (+) False kcns3b
TU252803 lncRNA upstream 60750 22799735 ~ 22800058 (+) True G186622
TU252735 lncRNA upstream 140915 22716970 ~ 22719893 (+) True G186578
TU252644 lncRNA upstream 323092 22535659 ~ 22537716 (+) True G186506
TU252914 lncRNA downstream 86837 22962051 ~ 22966010 (+) True si:ch211-22i13.2
TU252933 lncRNA downstream 141743 23016957 ~ 23018800 (+) True G186697
TU252957 lncRNA downstream 217434 23092648 ~ 23095505 (+) False dtl
TU252958 lncRNA downstream 265293 23140507 ~ 23142640 (+) False ppp2r5a
TU252962 lncRNA downstream 268216 23143430 ~ 23143648 (+) True G186725
XM_039781345.1 mRNA upstream 4233 22848098 ~ 22856575 (+) True ttbk2b
XM_039781077.1 mRNA upstream 50288 22807879 ~ 22810520 (+) True kcns3b
XM_039782452.1 mRNA upstream 65445 22790720 ~ 22795363 (+) True zpax1
XM_039782451.1 mRNA upstream 65445 22790932 ~ 22795363 (+) False zpax1
XM_039782453.1 mRNA upstream 70253 22787092 ~ 22790555 (+) True ttc32
XM_039782422.1 mRNA downstream 16958 22892172 ~ 22902489 (+) True nrbp1
XM_039782421.1 mRNA downstream 17649 22892863 ~ 22902489 (+) False nrbp1
XM_039781441.1 mRNA downstream 70295 22945509 ~ 22959259 (+) True rhag
XM_039781445.1 mRNA downstream 86819 22962033 ~ 22965996 (+) False si:ch211-22i13.2
XM_039780975.1 mRNA downstream 212606 23087820 ~ 23095221 (+) True dtl
TU252499 other upstream 795219 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 913808 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 3000603 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 3212652 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 3321600 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 703164 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 703164 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1204389 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 1631699 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2128805 25004019 ~ 25009407 (+) False lama2

Expression Profile