RNA id: XM_039782236.1


Basic Information

Item Value
RNA id XM_039782236.1
length 2477
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC120546953
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 22132841 ~ 22211477 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aggactcagcctagaGACCAGCTAGAGATCGCCCCAACAAGAGATTCTAGCAATGGAAATGCAAGAATAGCAGACGGACACTGTGATGTGACCGGGCATACAAACACAGCGACCGGAGTGTGGCCCGGACCTCGAAACCACACTCCCAAAGAAGTTGCTCCAGGAGCAGGGACCCAGACCGCCGGTGTACTCCCCTCCACCCAGCGCCCATGACCCCAACATAGTGGGAGACAGTCCTCCGGAGGGAAGCTCAGTCAAAAGCCCTGACGCTGTTCCAGATAGGAAGAAGATTAGGGAGACTAACCCCAACGAGGAGAAGTTttcagaaggaggaggaggtggaggagaaaGTCCACTGCCGCCCCCAGCCATGAATCCCATTATCAACTCCACCTCTAGCGCCAACATGGCCCTCATCAGCAACGCACTGGCAGCCTATACTTACATATCAGACCACCCAGAGAGGGCGGCGCTCTTCTTcgtctgtggtgtgtgtctgggcCTCTTTCTCACGCTCTTCGCTCTGGTTGTCCAGATCTCTTGTCGCACTGACTGCCAGCCCCGCCAGCGGCCTCCCGCCAAGAAACGAGCACGCCCCGCTGACTCGTCCTCCGATTCCAGCGACTCGGACTCGGACTGGGACACTACCTCGGATCTGTCGGCGCGACGGCACCGGCGATTCGAACGCACGCTAAACATGAACGTGTTCACGTCGGCGGAAGAGCTGGAGAGAGCGCAGAGGCTCGAGGAGAGGGAGCGAATCATCCGAGAGATCTGGATGAACGGGCAGCCTGACATCCCCGGGACACGGAGCCTCAATCGGTATTACTGAGGACTGCTAAtgggctttcttttttttttatatatatatagaaaagcGTACTTGAACATTTTTTAGGACGCACTTGGCTTGGAAGGGGCAAGAGGCATGGCCCTCATGAAGCTTTATAAGCAAGCATGAAAACTGTGGACTCACACTGATGAGAACAGTGGCAGGTATTGCAGACTTAGGAAGAATGACCTCCCTCTCTGCTGGTTTGCATATTCCTCTGGGTATCATAAGCTGTACCCCATTCAGTAAGAGAATAAGCTCCCGCTCTGCATGGTAAGCTCACCTCTTTCTGCCGGAAGCGAGGGGTGAAAGGCTACACTGCCTTGCCCGTGACCTCAGCAGGCCTTTTTGAAGTGGGGATTTATGGGTTAGCTGCCTTAGACACATAGGCCTGTAGAGACTACATGGTGACTGAAGGACCAAGGCCTCAGATGCGTCTGCTTTCCTGCATAAGACTGTGACACTTGGAGCTTTATGCTCAGCACCCTCCAGTATTCATGTGTGGACTTCACAGAGGAGGAGCATGAAGCAGAAAAAGGTGTACAATGGGACAATGTAAGACAATCTTTCCACAGTAAATAACCATGCTGCCTTTTGAACTATATAAAACCAAAAGATATTTTTGATGGGGAATTCATCTCAACCCTTATGAAATctattttataatatttaatagtttattgatgttgtgtatttttgttcTCAAGTATGGTTTATTAATTAGATATTTTTATACTTGGCGAAGGTTGTCTGGCACCTCAGGGATGCAATCCTAGTGTTTCTGTGTTCGGTTGATGTATTTTCTTCCTAAGAAGGGGATCAGCCcatttaaacagctaatgtcagcatttaaagaaaaagaaatagaaatatcATATAAAGAGCCTCAAAGAGGTTTAGTGATTTATCCTTATTTTTGATACAGTATGTTTAATTCACAGTGCAGTGCCTTTTCTAGCTATTAAGTCACTGTTGTCAAGAGTGCAgctaatgtacagtataaccCAATAACTGGTCAAATGATTTATTAATTGGATATCCCAATtgttttcttataatatatgTATTCCCCTTTTGTCATTACTGTGGACCATGTGTAAAATTTGTCTCTGTCACACGTTGCACTTGCTGTTGTCCCCAGATGTAAATGTACGTAACCAGAATATGCCAATTTTGTACCAGTGAATTTGCTAGAAATAATTTTTCAGGTTTTGTGTCAACAGTGCCCTTATTTCAAAGATACCAGTGCTAAACCTGATGCTTGTGGTAATCGCTGCTCGTCTGGAGAAGGAACCAGCACTGAAAAAAGGTTCACAGTGGACGTGCAACCTGCTTCTCTTGAATCAAGTTACCAGTTTAATAAAATAAGCTATTGTCAATCCAGCTCTGTTTGCGCTGCCCTGGATTCAAGCGTAGGAATAATTATAGTTTTCATAAAAAAAGCTTGATATTTTCATAACTGAGAGTTTAGTTGAGAGTACACAGGACATAGGGTCATCCACATAAAGACTGCCACtctatatagtttttttttataaagacagtTCTTGTGTTTAAATTTGAATGGGGTTAAAATGTGCTGAAAGCTGGTAAAGTGAGAACAAATTATGACTCCTGTGCTTGGAATAAACTGTGTTCAAAATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637027.1 lncRNA upstream 350154 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 437382 21745581 ~ 21746554 (+) True LOC120546760
TU252261 lncRNA upstream 641155 21540588 ~ 21542781 (+) True G186297
TU252179 lncRNA upstream 708632 21474552 ~ 21475304 (+) True G186220
TU252169 lncRNA upstream 835355 21347944 ~ 21348581 (+) True G186210
TU252574 lncRNA downstream 82965 22294442 ~ 22294697 (+) True G186452
TU252572 lncRNA downstream 89307 22300784 ~ 22301483 (+) False lin28b
TU252644 lncRNA downstream 324182 22535659 ~ 22537716 (+) True G186506
TU252735 lncRNA downstream 505493 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 588258 22799735 ~ 22800058 (+) True G186622
XM_039781905.1 mRNA upstream 222265 21947300 ~ 21961671 (+) True smek1
XM_039781904.1 mRNA upstream 222265 21947301 ~ 21961671 (+) False smek1
XM_039781906.1 mRNA upstream 224293 21947299 ~ 21959643 (+) False smek1
XM_039780897.1 mRNA upstream 236958 21944748 ~ 21946978 (+) False erh
XM_039782591.1 mRNA upstream 239854 21939012 ~ 21944082 (+) False paplnb
XM_039781163.1 mRNA downstream 1033 22212510 ~ 22221145 (+) True LOC120546308
XM_039781600.1 mRNA downstream 47120 22258597 ~ 22270747 (+) True LOC120546584
XM_039782705.1 mRNA downstream 69490 22280967 ~ 22301585 (+) True lin28b
XM_039782707.1 mRNA downstream 69490 22280967 ~ 22301585 (+) False lin28b
XM_039782706.1 mRNA downstream 69490 22280967 ~ 22301585 (+) False lin28b
TU252499 other upstream 118347 21985779 ~ 22065589 (+) True G186394
TU252459 other upstream 236936 21944743 ~ 21947000 (+) True erh
TU251678 other upstream 2323731 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2535780 19634283 ~ 19648156 (+) False acp1
XR_005636890.1 other upstream 2644728 19429596 ~ 19539208 (+) False nhsl1b
XR_005636956.1 other downstream 1366901 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1366901 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 1868126 24079603 ~ 24083104 (+) True G186975
TU253479 other downstream 2295436 24506913 ~ 24507813 (+) True G187094
TU253601 other downstream 2792542 25004019 ~ 25009407 (+) False lama2

Expression Profile