RNA id: XM_039782481.1


Basic Information

Item Value
RNA id XM_039782481.1
length 829
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC120547078
representative False

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21834478 ~ 21843556 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATACGATCTAGCACATGGTGTGTTTCAGTGTTGTGACTGTGACCGCCTGTGTCAGTAAGTCATTATCTTCAAGAACTGTATTTAGAGGGACAGGAGACGGGCTCAATCCGCCACACAGAAGTTCACACAACCATTCAACTGAGAAGTCCCGTGGGTGTCTCTCTATTTTTGCAGAGGTTTATAGATCCCTCTTTATCTGCAATCATGATCCAATTGGATGCTGGACAGGCTGGTTTGACAGAGATGACCCCTCTGGAACTGGAGACTGGGAAACCCTCTCTGATCTTCGCAATGAGTACCCAGGAAAGATCTGCTCTAAACCATTAGCTATTGAGGCGAGAACTCTATCTGGACTCACTGTGGCTGCAGCAGGTGATGTGATTTATCTaagGGACACCACTAAAGGATTTGTCTGCAGGAACCAGGACCAACCCAGGCCTAAGATGTGTAAGGATTATCGTGTTCGTTTCAGCTGCCCTCGCTCTTTCTGTAAAGTGTGCTGGACCCAGTGGTATAACCGGGACGCTCCCAGTGGAACAGGGGACTGGGAGAGTTTGACTAACCTGAGGACAGAAAACCCGGGACAAATCTGTGACAGCCCAATGTCCATTGAGGCTGTTACCTCTGACACATTGACCCAAGCCGTCTCCACAGGGCAGACCTTTATTTACAATCAAAATGAGGGATTGGTTTGCCGCAATACAGACCAGGAATCTGGCTTGTGCCTTGACTACAAAGTTCGGTTTGGGTGCCCATGCTAAGTCCTGACTCCACAGCAAACACTGCGAAGGATAAGACTCATTTAATAAAATTTCTCAATTTTCTCAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637027.1 lncRNA upstream 696 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 87924 21745581 ~ 21746554 (+) True LOC120546760
TU252261 lncRNA upstream 291697 21540588 ~ 21542781 (+) True G186297
TU252179 lncRNA upstream 359174 21474552 ~ 21475304 (+) True G186220
TU252169 lncRNA upstream 485897 21347944 ~ 21348581 (+) True G186210
TU252574 lncRNA downstream 450886 22294442 ~ 22294697 (+) True G186452
TU252572 lncRNA downstream 457228 22300784 ~ 22301483 (+) False lin28b
TU252644 lncRNA downstream 692103 22535659 ~ 22537716 (+) True G186506
TU252735 lncRNA downstream 873414 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 956179 22799735 ~ 22800058 (+) True G186622
XM_039782484.1 mRNA upstream 24804 21806015 ~ 21809674 (+) True LOC120547079
XM_039781940.1 mRNA upstream 79588 21751292 ~ 21754890 (+) True LOC120546759
XM_039781941.1 mRNA upstream 79588 21751584 ~ 21754890 (+) False LOC120546759
XM_039781938.1 mRNA upstream 107136 21723642 ~ 21727342 (+) True LOC120546757
XM_039782270.1 mRNA upstream 141352 21687280 ~ 21693126 (+) True acat2
XM_039782589.1 mRNA downstream 94922 21938478 ~ 21944082 (+) True paplnb
XM_039782590.1 mRNA downstream 94922 21938478 ~ 21944082 (+) False paplnb
XM_039782591.1 mRNA downstream 95456 21939012 ~ 21944082 (+) False paplnb
XM_039780897.1 mRNA downstream 101192 21944748 ~ 21946978 (+) False erh
XM_039781906.1 mRNA downstream 103743 21947299 ~ 21959643 (+) False smek1
TU251678 other upstream 1974273 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2186322 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 2295170 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 101187 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 142223 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 1734822 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1734822 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2236047 24079603 ~ 24083104 (+) True G186975

Expression Profile