RNA id: XM_039782589.1


Basic Information

Item Value
RNA id XM_039782589.1
length 2411
RNA type mRNA
GC content 0.49
exon number 13
gene id paplnb
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 21938478 ~ 21944082 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTGATTTTGACATATTTAACTAAAACTCATGGCTGCAGACTTGATATAAAACTATAAGCAGTCTCACAGCCTGAGGGTTTTAAGTGGAAACTATGTGCTTCAAATAGATGAAATCATAGCTTATATTCCacgttaaaaaaagaagtcccATTTTCTTGGTGGGGGGAAACAGTTTCTCTGTGTGGGTGAAACCTGACACTTTATGGGATGTGGTGTTGGTGAGCAGCGAGGGTGAGAAGACAGAAAGCTGGGCGTCAGTGCCTATACCTTCACTAGTGAGGTGCACAGCCCTCTGGACTGCTGGTCGACCAGCTGGGAATTCACTTCAAGAAGCCATCCTCATCAGTAGTTCTGCTGTAGCTTCTGGTGAAAATGAAGACCCTACAAGTCCTGGTTCTCCTACAGCTGCTGGTTGTACCTGCTATCACTctgACACAGCCAACCCATGACTACTGGGGAGAGTTTGGAGCCTATGGGCCCTGCAGCCGCACCTGTGGCACAGGAGTGGCAATGCGAACTAGGAAATGTATCACTTCAAGGACAGATGGGGGACATAACTGCATAGGCTCCTCTAAGTCCTACCGAACCTGCAACACACATGAATGTCCAGTTGGATCAAGGGACTTCAGGGAGGAGCAGTGCTCCCAGTTCGACAGAATAGACTTTCAGAGCAAGCGGCAGACATGGGTGCCTTATTATGGAGCATCCAATCCATGTGAGCTGACCTGTGTCCCAAGAGGAGAGAACTTCTTCTACCGACACAGACCTGCAGTGGTGGATGGCACACCATGCTACGTGGGCCGCACTGATATCTGTGTGGACGGCATCTGCAGGATACTGATCCAGGGAGAGTTTATGGGCTTGGATGAGGACACTAATTCCGTACACTCTGCTGCCCCCATTGCTGTTGCTCCTCACCCAAGGGAGACACTCACATATATCTACAAAACTGGTGTCTATGGACAATGCTCTGCCTCATGCAATGGAGGCATGCAGTATCGCAACGTGGAGTGTTGGGTTCAGGACCCAGTGAACCCCCGTGTGGTGGAAGAGTCTTACTGCATCACCCAGCGCCTGCAGAGGCCACACAGCCAGCAGGCCTGCAACATGCATCCGTGTGCTGCGGAGTACAGTGTCTCCAGCTTCAGTGTGTGCTCGGTGACTTGTGGGGAGGGCCAGCAGACAAGGGAGGTGACCTGTGTTGGGTCGGGTGGTGAACGTCTGGCTGACCATGCCTGTAGTGGATTGGCAAAACCCCCTTCTGTCCAGTCCTGCCGCAGACCtgcctgtcacacacacatcacctgGCATGTGACTGACTACGGACTGTGCACCAGAAGCTGCGGTGGTGGTgtgagggagaggagagtgggCTGTTTTGATACAGATTTAAACCCTTACTCAGAGGCCCGCTGTGGAACAGCTAGCAGACCTCTCTCTGTGGAGACATGCAACTCACAGCCATGTCCCAGAGCACAGATGGTCCCAAGTGTACAGGACCCAAGGGCACATGAAAGCACCATAAGAGGATTTGTGCCCCATGTTCCAGGAGACCCTTCAGCTTCCATGCCACAGACAAACATTGCTACCTACCCTCCTGTGATTGGTCCTCACTGTGCACAGTCATTCTATGGCTGCTGTCCTGACGGCCAAACCTCTGCCACAGGGCCCAGGAATGAGGGCTGCTCCCAAGATGACTGTGTTCGCACTAGGTATGGCTGTTGTTTGGATGGTGTGACTCCAGCTCAAGGATTTGGAAGGGCTGGATGTCCCGAGTACCTGACAGCTGTGCAACAACCACCACCTCCTGCCCATCCATCCACTGGTAATATGTGCTCCATGCCTCGTGATGAGGGCCCCTGTGATACTTGGATGGTTCGCTTCTACTATGACTCAGGCACTGGCAAATGTACTGAGTTCTGGTATGGAAGCTGCCAGGGAAATGCTAATAACTTTGGGTCCCTGGAAGCATGCCAGAGAGAGTGTGGGGGTGTGGCAACCCCAAGAGGGACCCCAAGGAGAGGGTCAACCAGTGGTGCTTTGAGGGCAAGGTCATAACCATGCTCACCACTAATGCCTCCAAATCAGGGCCATCTCTATGAAGCTATTACGTGATATTTGTACACACGTAGTATTTACATAtatgaagacacacacaaacatgtattaAAACTAACCACATCCTGCCTTTCATTTAAACATCAgactttacataaaaaaattatctaGATAGTCTAACATTATATGTGACATAATTGCAGCTGATGGTTCTGATTTTCTTATCTTTTTGTGATGCTCAGTATATATTCacttatatatttttacttttagatCTGGACTACAATAAAATAATGTCAATGTGATTACCCAAGTTAAATCATCGACCTAATCAATAAAAATTGTGTGGTTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005637027.1 lncRNA upstream 104696 21832948 ~ 21833782 (+) True LOC120547080
XR_005636932.1 lncRNA upstream 191924 21745581 ~ 21746554 (+) True LOC120546760
TU252261 lncRNA upstream 395697 21540588 ~ 21542781 (+) True G186297
TU252179 lncRNA upstream 463174 21474552 ~ 21475304 (+) True G186220
TU252169 lncRNA upstream 589897 21347944 ~ 21348581 (+) True G186210
TU252574 lncRNA downstream 350360 22294442 ~ 22294697 (+) True G186452
TU252572 lncRNA downstream 356702 22300784 ~ 22301483 (+) False lin28b
TU252644 lncRNA downstream 591577 22535659 ~ 22537716 (+) True G186506
TU252735 lncRNA downstream 772888 22716970 ~ 22719893 (+) True G186578
TU252803 lncRNA downstream 855653 22799735 ~ 22800058 (+) True G186622
XM_039782481.1 mRNA upstream 94922 21834478 ~ 21843556 (+) False LOC120547078
XM_039782480.1 mRNA upstream 94922 21839943 ~ 21843556 (+) True LOC120547078
XM_039782482.1 mRNA upstream 94922 21840353 ~ 21843556 (+) False LOC120547078
XM_039782484.1 mRNA upstream 128804 21806015 ~ 21809674 (+) True LOC120547079
XM_039781940.1 mRNA upstream 183588 21751292 ~ 21754890 (+) True LOC120546759
XM_039780897.1 mRNA downstream 666 21944748 ~ 21946978 (+) False erh
XM_039781906.1 mRNA downstream 3217 21947299 ~ 21959643 (+) False smek1
XM_039781905.1 mRNA downstream 3218 21947300 ~ 21961671 (+) True smek1
XM_039781904.1 mRNA downstream 3219 21947301 ~ 21961671 (+) False smek1
XM_039782234.1 mRNA downstream 188759 22132841 ~ 22211477 (+) True LOC120546953
TU251678 other upstream 2078273 19856735 ~ 19860205 (+) False kif25
TU251521 other upstream 2290322 19634283 ~ 19648156 (+) False acp1
XR_005636888.1 other upstream 2399170 19429595 ~ 19539308 (+) False nhsl1b
TU252459 other downstream 661 21944743 ~ 21947000 (+) True erh
TU252499 other downstream 41697 21985779 ~ 22065589 (+) True G186394
XR_005636956.1 other downstream 1634296 23578378 ~ 23589689 (+) True nfkbie
XR_005636955.1 other downstream 1634296 23578378 ~ 23588514 (+) False nfkbie
TU253325 other downstream 2135521 24079603 ~ 24083104 (+) True G186975

Expression Profile