RNA id: XM_039782490.1


Basic Information

Item Value
RNA id XM_039782490.1
length 2984
RNA type mRNA
GC content 0.51
exon number 16
gene id LOC120547084
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18914867 ~ 18932089 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATggaaaagagagacaggaagccGGGATATTTTGCCAgGCTGAAGAGGCGGAGACAGCTCAAGCAGAGCCAGTCCGAGAAGAATGTGGCTGAGCAGAACCCGGGGATAATTTCCTGTCCAGACATCCCAAATGACAGCGACCCCAACAGGAAGAAAGACCTCcagaaaataacagaaaagCCACCTGCAGGCTCGGACGATGACGGTAAAAGTAAGAATCAGGcaaagagggagaagaagaggcCACCAGGGACAGTGGATTTCATCGTGGGACCTGATGACTCCCTCATCAGCATCGCACTCAAGTTCAACATCACCCCAAACAAACTGGTCCAGCTGAACAAGCTCTTCTCTCGCAGTGTCTACCCCGGTCAGAAGCTGTTTGTCCCCGATGTGTCAGAAACTGACCTAAGGTCTCTGAGTTCCTCTGAGCCCTCCTTTACAAATGGCTTATCAGAGAAAGCATCCCATGGCGGCGTTTCAAACTGCATGTCAGCAAAGTCCCTCCGGCGTGAGCTCTCCCCAAACTCCGAGGACGAGAGCCCGGCAACGGTTAAATTCATCAAGATGAGCTGCAAATATTTTACTGACGGCATGGGAGTGGTGGGAGGCGTGCTGATTGTCACCCCCAACAACATCATGTTTGACCCCCACAAGTCGGACCCCCTGGTGATCGAGCTCGGCTGCGAGGAGTACGGCCTGATCTGCCCCATGGAGGAGGTGGTCTCCGTGGCGCTGTATGACGACGTGTCGCGCATGAAGCTCAAAGATGCTCTGCCATCAGACCTACCCCAGGATTTGTGTCCTGTGTACAGGCCCGGCGAGTGGGAGCAACTGCCGTCGGAGCGAGATCTAAACCCTTTCAGCCGCTATGAAGCTCTTGATCCAAAGCGACCAATCGTCTTGGACGACATCGAATCAACCCTGTCAGAAACCGCGAGCACAGAGGGCGAGCAGACAGAGAAGTCTCCGTCAGACGAAGGCTTCACAGAGTTGGAGCCAACTGTCAACGGGAGCATTGAAGAGACAGAGGGGATGTCCAAAACACTCAGCACTGTCAGCAGGGACCAACAGGAACTCGGACCCAGCCGCCCAGGCCGGGCACACTTTCAGGACAAGTCGATTCTTGGTCAAACTAAAGTAAAgctagatgatgaagaggatgagGGCGTAGCTCAGAACAACTCTATTGAGGATGGAGAGTCAATACAATTCTCTTCAGAGACTAAAAAACAGGGTGACTCGCGTCACAAACCAGTAAACCAAGAGGAAACCAAAGATATCACACCTAAAGGGACCGAAGAGCTGCTAAATGATAAAATAATCGGCGCACCAGTGGACCAAAACAGGGAATTTAGTCTGAAGGAGGCTTCCGAGGTTGGTGGGGACTCGAGTCCTAAGAGACAAAGCCCAGACAGACCAGCAGGTGGGGCTGAACTCAGTGAGGAGGAGACTCGGAAGAAAAGCTATGAGGCAGAAGTGAAGTCATGGCTGCTGGAGAGGGTGCAGGCTCCAATAGAAGACATGCTTTCTTCATCCGAGGAGAAGAGTAAAATCCCACCTATGTTCCTATGCTTCAAAGTGGGAAAGCCAATGAGGAAGTCCTTTGCCACCGGGATGACCTCTAGTCCCGCCTACTCATTTGGGGGCCGGGGCAAACAGCCAGAGTACTGGTTTGCTGTGCCACAAGAAAGGGTGGACCATCTGTATGCATTTTTCGTCCAGTGGTCTCCGCATGTGTACGGGAAGGAGGCTCGGGAGCAGGGCTTTGTTGTGGTGGAGAAAGATGAGCTGGACATGATTGACAACTTCTTCAGTGACCCTGCATCTTGCAGCTGGGAGATCATCACCATTGACGAGGCGAAGCGTAGGCAGAGTTTCAGCAGCTGTGACGGAGAATTGCCAGTGGATGCGCTGCCCATGCTCAGTGATGCCAGTGATGTGCTGCAGGacacacacattgagaagCTTGCCTGTCGCTTGCCCGCGCGTGTGCAGATTTACCCCTGGAGACTGGCCTACAGCACTGTGAAACATGGGACCAGCCTGAAGACTCTGTACAGGAGCCTGGCAGATGTGGACAGTCCTGTGTTGCTGGTCATTAAAGATATGGATAACCAGATATTTGGGGCTTTCTCGACTGATCCCTTCAGAGTGAGCGAACACTGCTACGGCACAGGAGAGACATTCCTCTACAGCTTCTGTCCTGAGATCAAGgtgTACCGCTGGACGGGGGAGAATTCTTACTTTGTGAAGGGCAATACTGATTCTCTGcagatgggaggaggaggTGGTCAGCTGGGTCTGTGGCTGGACGCTGAGCTGTACCGAGGCACCACCACCAAATGTGCCACCTTCAACAACCAGCCGCTCTCCGCCCAGCAGGACTTCAACATCCACAGTGTGGAGGTCTGGACCTTCGAGTAGGCCCCACCTGTTTCGAGCTACTCCTACATTCACTCTCCGCTCCAAACCTTcaaacatcccccccccccaagtgtTATTACGCACTTGTATACTTGGAGGCAAACCTAGCTACCCCACAATGACACTAAATGTTCTGTGAAAGAAGCCTGTGCAGTTGTGACTGGACTGGTTTTTGAGGTGGGTTTGACCTGCAGGTAGGTTGGCCAGTTCATGTCTGGTTCCTCTGCACTTCAAAGGTGGAAGTGTGAACAattttttgtttctctgtttATTGGCTGCCTTAGACATCTGTCAACGCCTCCAGCTTTCCCAGCATGCAGACTGCCTTACCAACATAAGCGTATGAGGAGAGGGAGAATAGGAAGGCTGCTGATGTTACTGTTGGGGTTATTctataaaacatatttcaagTGTGTATGGAAGAACAAGGTATCCCATAATGATGTTGGTTACTTTGTGCAAAGATAATGATGAATTAGTTGATTTGGGAATGTACAGGATAATGTGCTGAAGACTTTTGgaatctttcttcttttcttttttttttcttttttttt

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251313 lncRNA downstream 396 18913813 ~ 18914471 (-) True G185556
TU251322 lncRNA downstream 7702 18904679 ~ 18907165 (-) False LOC120546223
TU251213 lncRNA downstream 182057 18726872 ~ 18732810 (-) True G185479
TU251160 lncRNA downstream 216639 18695681 ~ 18698228 (-) True G185438
TU251193 lncRNA downstream 220071 18694554 ~ 18694796 (-) True G185467
TU251400 lncRNA upstream 178625 19109509 ~ 19110183 (-) True G185619
XR_005636902.1 lncRNA upstream 259352 19190236 ~ 19203995 (-) True LOC120546625
TU251425 lncRNA upstream 266868 19197752 ~ 19197969 (-) True G185644
TU251533 lncRNA upstream 403171 19334055 ~ 19335679 (-) False LOC120546238
TU251532 lncRNA upstream 404270 19335154 ~ 19335679 (-) False LOC120546238
XM_039780982.1 mRNA downstream 1786 18908657 ~ 18913081 (-) True LOC120546204
XM_039781002.1 mRNA downstream 7613 18904537 ~ 18907254 (-) True LOC120546223
XM_039781694.1 mRNA downstream 16556 18873734 ~ 18898311 (-) True LOC120546626
XM_039781857.1 mRNA downstream 45258 18820344 ~ 18869609 (-) False LOC120546718
XM_039781174.1 mRNA upstream 26577 18957461 ~ 18962093 (-) False LOC120546312
XM_039781173.1 mRNA upstream 26577 18957461 ~ 18962093 (-) False LOC120546312
XM_039781172.1 mRNA upstream 26577 18957461 ~ 18962093 (-) True LOC120546312
XM_039782660.1 mRNA upstream 84111 19014995 ~ 19046063 (-) True LOC120547184
XM_039781703.1 mRNA upstream 146394 19077278 ~ 19095705 (-) False snx9b
XR_005636828.1 other downstream 125452 18778130 ~ 18789415 (-) False abcd4
TU251114 other downstream 408679 18493308 ~ 18506188 (-) False LOC120546829
TU251109 other downstream 422009 18489816 ~ 18492858 (-) False LOC120546829
XR_005637051.1 other downstream 846254 18068498 ~ 18068613 (-) True LOC120547347
TU250885 other downstream 1001831 17911270 ~ 17913036 (-) True G185233
TU251888 other upstream 1631553 20562437 ~ 20567479 (-) True G186006
unassigned_transcript_1082 other upstream 1946980 20877864 ~ 20877946 (-) True trnal-uaa_20
XR_005636822.1 other upstream 2082780 21013664 ~ 21143973 (-) False syne1a
XR_005636821.1 other upstream 2082780 21013664 ~ 21143973 (-) False syne1a
XR_005637050.1 other upstream 2241957 21172841 ~ 21173006 (-) True LOC120547346

Expression Profile