RNA id: XM_039781694.1


Basic Information

Item Value
RNA id XM_039781694.1
length 5796
RNA type mRNA
GC content 0.50
exon number 19
gene id LOC120546626
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 18873734 ~ 18898311 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACTATAGTGTTACGCGGCCTTGTTAGCCTCTCCAAGGAAAACCCCATTTGGGCAAAGGAGCACCACCGGCCACCAAAGAAGGAGATCAGGAGGAAACGGCGGGCGGCCAGAAGAGCCAAGACCATGGGCAGACGCAACTTAGTGAGGGCGGTTGGTATTTCTCGAGTGATGATATTAACGGTGTACCTCAGCGATGGGGAACAGGCTGTGACTGAGGTGCCCATCACCCCTGAGACGACGTGCCGCGATGTTGTCGAGTTCTGCAAGGAGCCCGGCGAGAGTGGCTGCCACCTGGCTGAGGTCTGGAGAGGCAACGAGCGAGCGATTCCCTTTGAGCACATGATGTATGAACATCTGCAGAAATGGGGGCCTCGGAAACAAGAAGTCAAGTTCTTCCTCCGGCATGAAGATTCGCCAACGGAGAGCAGTGATCAAGGGAGTCAGCAGTCTCAGGATCAGACGAGTCGCAGAAGTGGAAACACTGGAGAGAAGCACAATGAGAACGGGgtggGGAATCAGCGCGTGGAGCTCACGCTGTCAGAGCTGCAGGAGATGGCCacgcggcagcagcagcaaatcGAGGCTCAGCAGCAGATGCTCGTCGCAAAGGAGCAACGTTTGCGTTACCTGAAGCAGCAGGAGCGCCGTCAGCAGCAAACCGTTTCAGAGAGCGAGAAGCTGCAGAGGCTGAAAGACCGCGTGGAGAGCCAGGAGTCAAAGCTCAAGAAGATCCGGGCAATGAGAGGCCAGGTGGACTACAGCAAGGTCATCAATGGCAACCTGTCGGCAGAGATTGAGCAAGTCAGCAGCCTGTTCCAAGAGAAGCAAGCCGAGTTACAGTCTGCAGTGCTGAGGGTGGAGCAGCTCAGCCTGCAGCTGGAGGCGCGCAGGGGAAAGCTCAACGGCATACAGACCGCCCTGGGGGGGCAAGTAACCGGCGCTGCAGCCCTAGAGCTCCGGAAACTCTACCAGGAGCTTCAGATCCGGAACAAGTTGAACCAGGAGCAAAACAGCAAGCTGAAGCAACAAAAGGACCTTCTCAACAAACGCAACATGGAAGTGACGCTCATGGACAAGCGCATCAGCGAGCTGCGGGAACGCCTCTACAAGAAAAAAGCTGAGCTGAACAGAGCCAACGGGCCTCCCTCTCCCCAGCCTGCTCCTGGTACTCTGGGCCGTGTTGCTGCTGTCGGGCCGTACATCCAGGTCCCTGTACCGGGCCGGCAGGAAGGAGGCTACACCATACCACCAGATCCACTGAAGCCTCAGGCTCTGGGCGTTAATAACACCGCCAACCAAGGCCGCACCAAGTCAGACGGTGTGCGAAAGCCTCCCGGCCCTTGGAAAGTGTCTGATTTAGACATCGTTGTGGACCCAGTACCCCCGTCCCTTCCAGAATTACAACCGGGCACTGGAGCCTCCACTGGCTCTGACGGCACGTCCCCTAATGATACTGGTTGGCCTACTTTAGGCAAGACCACCACATCTCTAAAGCCTCCTGAGAGACGAGACTCAGGGACTGATACCCAGGGCAAGAGTCCTCCCTCAGGCTCCCCCGTCACTCCAAGTGCAGAAAAGGTGCTAGACCCCAAAATGACCGTGTCCTCCCCTGCCATATCCAAGCCACAGCCGCCTCCCTATGGCTCCCATCTCACCTCTGCAAACTCGGCCAGCTCCTTGGATCGACGCAAGGAtgtacctcctcctcctcgcccGCTCCCGAACCCGCCAGCACCTGCTTGGCCCCGCGTCCCCGCCTCCACAGGCTCATCCTCGCAGCAGATCCAGCAGCGAATCTCGGTGCCGCCAAGTCCCACCTTTCAGCCTAATGCACCGCTTTTCCCTCCTGGGCTGAGTGAGCGGCTGGATCCCCCGCCAGCTGTGGCAGTACGCCCCTTCATCCCAGACCGAGGATCACGGCCTCAGTCGCCCCGAAAGGGCCCACCTACCATGAACTCCAGCTCCATCTATCACATGTACCTCCAGCAGGCAGCGCCAAAGAGCCAGCCGCTCAAGCCTGCTCTCAAAGCAGTATATGGGAAGCCTGTTCTCCCCCCTAGCTCGACCCCCCCCTCGCCTCTGCCTTTCGCCCCGGCAGGAGGGGCCTTCCCGTTGCTCCAAGGCCACCTTGGTGGTGAGGACACTTTGGATGGAGAATTTGATGATCACGAGTACTTCCAGCACCCGGAGCCGTTAGCGCCTCCTCCCAGTGTGGAGAACATCCCACGGCCACTCAGCCCTACTAAGCTAACGCCCATGGTACACTCCCCGCTGCGCTACCAAAGTGACGCCGATCTTGAGGTGCTCCGCAAAAAACTGGCCAACGCTCCGAGACCGCTCAAGAAGCGCAGCTCCATCACAGAACCGGAGGGCCCCAGCGGACCCAACATCCAGAAACTGCTCTACCAGAGGTTCAACACTCTAGCAGGAGGCATAGAGGGAAATGGAGTCAGTGGATCAGGAAGTGGCAACGGTGCAGGTAATGGAACGCCATTTTATCAGCCAGCTAATCCTCCCGCGTATCTGGGAGGCGACTCTGTGGCCGACACCGACAATGGCAACCTCCCCTCTGAGACGCCGCTACCACCACCACCGGAGGGACAGGACCTGGGCTCTGAGGCTCCGCCTCCATCTACTGACGCTAATGACAATGAGCCACTGCCCTCGCCACCAGAGCTGGATCCTGCTGAAGCGGAGGAAGCCGAGGAGGACGACAACAATAACAATGTGGGAAGCTCTGAGGCATCGTTGCCCAGCCCCGTGCCAGAGGTGACCACTCCAGAAGAGAGCGGCAAAGTGGCCTCGCAGCCCCTGGACAAGCGCACAAACCTGAAGAAGCCAAACTCTGAGCGCACTGGCCACGGCTTCAGGGTGAAGTTCAACCCTCTGGCCCTGCTGCTGGATGCCTCATTGGAGGGAGAGTTTGACCTCGTCCAGAGGATCATCTATGAGgTGGAGAATCCTAGCACTGCCAATGACGAGGGCATCACACCCCTGCACAATGCAGTGTGCGCGGGACATCACCACATTGTCAAGTTCCTGCTGGATTTCGGTGTGAACGTCAATGCTGCAGACAGTGATGGCTGGACTCCGCTTCACTGCGCCGCGTCCTGCAACAGTGTTCATCTCTGCAAGTTGTTGGTCGAGTCAGGGGCCGCCATCTTTGCCAGCACCATTAGTGATGTGGAGACTGCTGCAGATAAATGCGAGGAAATGGAAGAGGGCTACATCCAGTGCTCCCAGTTTCTATATGGTGTTCAGGAGAAGTTGGGTGTAATGAACAAGGGGACCGTGTATGCTCTGTGGGATTACAAAACTCAGAACCAGGACGAGCTGGCGTTCAGCGAGGGGGACGCCATCACTATTCTGCGACGACAGGACGACAGTGAAACAGAGTGGTGGTGGGCGCGACTCGAGGACAACGAGGGCTACGTGCCCCGCAACCTGCTGGGGctctatccTAGGATCAAGCCTCGTCAGCGCTCCCTGGCATAGTGGCTCACTCCACTGACCTCTGGCTAACAGCTGGACTAGTGACAAAAACCAGGAGCAGAGAACAAAGGAGCCTGGTGCTCTGTCTTCTCCCCGTGGCCATAACCTCCCCCGGCCTTGTGCTTCTCACAAATCCTTTTTCTCTGACGCAGTGGGCACCGAACTCTGATACCCATATTTACATCTACACGCACATAGAAACACTCGATGAAACACAAGCACTCCAAATGCGAATAAATCTCTTAAACCACTCCATCCTGATTTGCACCCCCAACAACCAGCACCTTTCACCCTATTGCTCTGTCATTGTCCCAACTTGATCTTACTCCGATTCAGTGTCAGCTCTGTATCAGACATCAACTTGAAGAATAAAACACTAACCCATGTCTCAGTAGTTCTTGCAGTGGACTCTTCAGCCATGAGTTCTGTGGTGGCACTGGTTTACATGACACTGTATGTTGACTGGAAAATCATCTCTACTGGTGAGGCGTTGCTGATTTTTGTTAGTGGAATGTACTTTGAGTTATAGgacattaagttttttttttttaatgccaatTTGATCCCCTTGCGCGACAAATGTGCTCTGTGTTTGATTTTGCTGTAGTCTAACCACCAAAGATGAATATAGGTTTACCCATTTTAATTCTATTACTCCCCAAGACCTTGAAGAAAGGTTGAGGAGTGAGATCAAACAATTGATTTGCTGCTATCAGTATTGATTAATGATCTAAAGTCCTTCTAAATATGCTCAAGGAGCAGGAAATGGATTCAGGACTGGAAAATAGAAAATGTTGTAAACCCTCAGTATTAACTACACAGGCCAGTCAAAACAAATCCAGCGTATTAAAGAAAAGGATGGATCGCATTTCATGTACATCATTGCGagacttgttttttttcattcagtgtCACATGTTCAGAATCTAGGAGTATTGTGGattataaagttttttttctataatGGGAGATTTCAAGATGCATCAAGCTGTGTGAAAACACTGTTTGAATGAACAATCAAAATATTCACACAGAATTAGTATTTCGCTGAAATGAACGGCTCATGCTGCAGTTTCGAAAAGATCTTGTGatggaaatggaaaataaacCAGTATTTTTGCTTAACCAAAAACGTTGCCAGATGAGAAGAGCTGTAGAGTATGCATaaaggttacaaatgtaaaagaTCTAAAGGTATTGCAATTAAGAATTGGAAAAAGAAGTTGTTTTTATAGTTCTAAATTCCACAGTGGTGAGACGGGCAAGAATCAGCTCCACGGGGACAGACAGGTCCTAGTTCTTAATGGTGTTATTGGGTCATTTTTGCTATTTTCAAGTAATTTGCAGTATGTATAATGTTTTTAGGCATTTATAATAAGTTGGCCCTCACTACAGAGattcatagtttttatttttttctgacaacATGGCAAGGAGACCTGCAAGCAGTATCTCTACATGAAAAGAAGAACTTGCAAATATTTAATGAAATCCTTCACTGCACCTcaaaaaacactgaaatcaTCACTCAAAACACAATAACGAGTAACTTTGTTACCCCACTAGACAAAGTTAACACTCAATATTAATAACTTATTTTTGTTCTACTAGCTGCTAAGTAGATCTCTGGGCACTTAACGTTGCAGTTATTTTTCTGTGGCTGTGACAAACTCCACTTGAAACACTTAATCTCAGGACCAACATGGTGCTGCTGACACTCTTCCACCACTAAACTAGTGATcatatttctattttctatCTCAACAAACATCATGTTCAATTGAGCAgcgaaccaaaaaaaaaaagaaaacggatCAGCAATGGGCATAAATTATTGATCGATGAAGAGATGGTTATTGTGTCTGAAATGTaacatgaaaacaaatgttCAGATTCAGTCTTTAAATTCGCTTCAGACAATCCTGAATTTGCCCAGTTCTCTTCCTCTAGCTGCCCCCCTTTCAGGTATACACCATTCCAGTAACACTAATACATGCGTTATATGTCACATTATTATACATCTAGAGTCCAACAACTTGTTCTGAACTCTGAGTGACTGAGTGGTATGCCAGGTGTGCTAATGGCCCAGGCTTTATGATGGCTTAATCTGTACATAGTGTGAGGAGATGTGTTCTATGTCTGTTTGCTGTATGGACAAGTGGGCTTTCTGTATAAACGCTGTACTCACACATTGAATTCTGTAaatgtgaacaataaaacagAGGCTCTGGCATGACTAATGTATTTCAGTGTCGTATCGGCGAAATAATGCAgtttttcattttataaaatgtgtaaatatt

Function

GO: NA

KEGG:

id description
K17554 PPP1R13B, ASPP1; apoptosis-stimulating of p53 protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251213 lncRNA downstream 140924 18726872 ~ 18732810 (-) True G185479
TU251160 lncRNA downstream 175506 18695681 ~ 18698228 (-) True G185438
TU251193 lncRNA downstream 178938 18694554 ~ 18694796 (-) True G185467
TU251181 lncRNA downstream 228562 18644376 ~ 18645172 (-) False LOC120546357
TU251180 lncRNA downstream 230776 18640421 ~ 18642958 (-) True LOC120546357
TU251322 lncRNA upstream 6368 18904679 ~ 18907165 (-) False LOC120546223
TU251313 lncRNA upstream 15502 18913813 ~ 18914471 (-) True G185556
TU251334 lncRNA upstream 30014 18928325 ~ 18977441 (-) True G185565
TU251400 lncRNA upstream 211198 19109509 ~ 19110183 (-) True G185619
XR_005636902.1 lncRNA upstream 291925 19190236 ~ 19203995 (-) True LOC120546625
XM_039781857.1 mRNA downstream 4125 18820344 ~ 18869609 (-) False LOC120546718
XM_039781854.1 mRNA downstream 4125 18820344 ~ 18869609 (-) False LOC120546718
XM_039781855.1 mRNA downstream 19314 18820344 ~ 18854420 (-) False LOC120546718
XM_039781856.1 mRNA downstream 32968 18819081 ~ 18840766 (-) True LOC120546718
XM_039780962.1 mRNA downstream 83361 18778884 ~ 18790373 (-) True abcd4
XM_039781002.1 mRNA upstream 6226 18904537 ~ 18907254 (-) True LOC120546223
XM_039780982.1 mRNA upstream 10346 18908657 ~ 18913081 (-) True LOC120546204
XM_039782490.1 mRNA upstream 16556 18914867 ~ 18930884 (-) True LOC120547084
XM_039782492.1 mRNA upstream 17113 18915424 ~ 18932089 (-) False LOC120547084
XM_039782487.1 mRNA upstream 17113 18915424 ~ 18932089 (-) False LOC120547084
XR_005636828.1 other downstream 84319 18778130 ~ 18789415 (-) False abcd4
TU251114 other downstream 367546 18493308 ~ 18506188 (-) False LOC120546829
TU251109 other downstream 380876 18489816 ~ 18492858 (-) False LOC120546829
XR_005637051.1 other downstream 805121 18068498 ~ 18068613 (-) True LOC120547347
TU250885 other downstream 960698 17911270 ~ 17913036 (-) True G185233
TU251888 other upstream 1664126 20562437 ~ 20567479 (-) True G186006
unassigned_transcript_1082 other upstream 1979553 20877864 ~ 20877946 (-) True trnal-uaa_20
XR_005636822.1 other upstream 2115353 21013664 ~ 21143973 (-) False syne1a
XR_005636821.1 other upstream 2115353 21013664 ~ 21143973 (-) False syne1a
XR_005637050.1 other upstream 2274530 21172841 ~ 21173006 (-) True LOC120547346

Expression Profile