RNA id: TU262526


Basic Information

Item Value
RNA id TU262526
length 787
RNA type TUCP
GC content 0.43
exon number 2
gene id sf3b5
representative False

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 12287013 ~ 12290530 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCGGAAGTCATCGTTCTATTGCATTGCCACGGAGTGCGAACGGAGTAGGGTATTATTTACATCTTCTGCCTTCGCTTTTACATTCTTTACATTTTATCGACCTCTCGGACTCTCATCGCCGCGAGAATGACTGACAGATACAACATTCACAGTCAGCTGGAGCATCTTCAGTCAAAGTACATCGGCACAGGACACGCTGACACCAGCAAGTGGGAATGGCTGGTCAACCAGCACCGAGACTCGTACTGCTCCTACATGGGACATTTTGACCTGCTCAACTACTTCTCCGTCGCTGAGAACGAGAGCAAAGCGCGTGTCCGCTTCAACCTGATGGAGAAGATGCTTCAACCATGTGGACCACCAGCAGACAAACCTGATGATGCCTAGATTACACTGGAGTGAGCTGTGTTTTTTACAGGATGTTTGTGTAtgattctttttgtttgttggaCATAGAACTTGATTTTCTGCTAAACATATTTAATGTTATGCTCTTGTGAAATTTCTGACCATAAAATGAACCTTGTGTAACCCTgccaagttggcaacactgaatAGATTGTCCATTTACACAATAGAAGATACCTGGACACAGATCTTCACGTGTATCTTGCATCTGGATCACGGAAAAACCTTGTTTCTTGTCCCGTACAGCTCTGCAGCTCTCCGGCAAATTATCAGAGAAGATGGAAAAGTGGCATACTATCATCTTGTATtaactgatggctgtattctcGATtagattttctgttttgttttaattaaatttcataCGTTAccaattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262490 lncRNA upstream 106093 12178791 ~ 12180953 (+) True G193296
TU262489 lncRNA upstream 108569 12177585 ~ 12178477 (+) True G193295
XR_005637131.1 lncRNA upstream 269393 12007635 ~ 12017653 (+) True LOC120548033
TU262393 lncRNA upstream 269917 12016822 ~ 12017129 (+) False LOC120548033
TU262381 lncRNA upstream 296831 11987274 ~ 11990215 (+) False G193213
TU262594 lncRNA downstream 175365 12465597 ~ 12465813 (+) True G193373
TU262615 lncRNA downstream 477036 12767268 ~ 12767474 (+) True G193392
TU262616 lncRNA downstream 553840 12844072 ~ 12844380 (+) True G193393
TU262619 lncRNA downstream 567568 12857800 ~ 12886083 (+) False G193395
TU262620 lncRNA downstream 567568 12857800 ~ 12932854 (+) True G193395
XM_039784922.1 mRNA upstream 8671 12246951 ~ 12278375 (+) False oprm1
XM_039784921.1 mRNA upstream 11415 12246951 ~ 12275631 (+) False oprm1
XM_039783438.1 mRNA upstream 111090 12142395 ~ 12175956 (+) True pcnx2
XM_039783439.1 mRNA upstream 111090 12142395 ~ 12175956 (+) False pcnx2
XM_039783440.1 mRNA upstream 111090 12142395 ~ 12175956 (+) False pcnx2
XM_039784903.1 mRNA downstream 61091 12351323 ~ 12370045 (+) False LOC120548560
XM_039784898.1 mRNA downstream 61092 12351324 ~ 12371500 (+) False LOC120548560
XM_039784900.1 mRNA downstream 61093 12351325 ~ 12373271 (+) True LOC120548560
XM_039784902.1 mRNA downstream 61093 12351325 ~ 12371500 (+) False LOC120548560
XM_039784904.1 mRNA downstream 61093 12351325 ~ 12371245 (+) False LOC120548560
XR_005637197.1 other upstream 8671 12246951 ~ 12278375 (+) True oprm1
XR_005637198.1 other upstream 8671 12246951 ~ 12278375 (+) False oprm1
XR_005637161.1 other upstream 540344 11717893 ~ 11746702 (+) False sdccag8
TU262145 other upstream 918423 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 921442 11357040 ~ 11365604 (+) False prepl
XR_005637191.1 other downstream 61092 12351324 ~ 12371270 (+) False LOC120548560
XR_005637192.1 other downstream 61093 12351325 ~ 12371270 (+) False LOC120548560
XR_005637194.1 other downstream 61093 12351325 ~ 12371270 (+) False LOC120548560
XR_005637193.1 other downstream 61093 12351325 ~ 12371270 (+) False LOC120548560
TU263049 other downstream 1784410 14074642 ~ 14076457 (+) True G193730

Expression Profile