RNA id: XR_005637197.1


Basic Information

Item Value
RNA id XR_005637197.1
length 3347
RNA type transcript
GC content 0.45
exon number 7
gene id oprm1
representative True

Chromosome Information

Item Value
chromosome id NC_053130.1
NCBI id CM020927.1
chromosome length 36824488
location 12246951 ~ 12278375 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGAGggagaaaagggagaaggaaggaaaaataaaagaagcaaGAATGGAAGGAagggaataaaaaaacgtaGGAAACAAAGCAATAAGAAAATCTGAGCGAAAGGGAGGAAATGAAGTATAGGAAAAAggggggaaggaaagaagagaggaaggaacCGAGGGACGAATGAAGAAAGAGAGCGAACTAACTCATTTTCACGTCCTGCTTCTGCTCTGTGCAGGATCGCTGTGCCGCGCGAGGGTTGTTAGTAAACTAGGCTTTAGGTGGTATACCCTCATCACACGCGGCAACATTCTTCCACACTGTGAGATTTAACGTTACCGACGGTCCGTCCCGCGCCTGACACGCAGCGCTTCTTTAAGCCAACACCAGACAAGCACTCAGCGGGGCATCACAGGCACCGAGTCTCCGACGGGCACCCAAGGGGAGTCGAAAGACGCGCACAGCACCTACAGTACGGCACATACCGAACGAGGACCATGGAGACCGCAGGCAACGGCTCGGACGCGAATTACCGGAGCCAGCTCTACAACAACAGCAGCTTCTGTGGAAACTTCACCGACGACAACACCACGAGCTTCGCGGAGGCGCGATGCCGCGGGGATCGGGGACTGACCAACAGCCTGGAAGACGACACCAACCCGGTTATCATAGCGATTGTTATCACCGCTCTCTACTCGATAGTGTGCGTGGTGGGGCTAGTTGGAAACGTGCTGGTCATGTATATCATCGTAAGATACACTAAAATGAAGACCGCCACCAACATCTACATCTTCAACCTCGCTCTGGCCGATGCCTTGGTCACCAGCACGCTACCATTCCAGAGCGTCAACTACCTGATGGGGACCTGGCCGTTTGGAGACATACTGTGCAAGATGGTGATGTCCATTGACTACTACAACATGTTCACCTCTATCTTTACGCTCACCACCATGAGCATTGATCGCTACGTCGCTGTGTGCCACCCAGTCAAAGCGCTGGACTTCAGGACACCGCGTAACGCCAAGATCGTCAACGTCTGCAACTGGATTCTCTCCTCGGCCATCGGGCTGCCTGTAATGTTCATGGCCTCCACCGTCCTCTCTCCCTCCAGTATTGTTGACTGCAAGCTGATATTCCCCATCCCCTCCTGGTACTGGGAAACCCTGCTGAAGATCTGCGTGTTCATCTTTGCCTTCATCATGCCCGTCCTCATCATCACCGTCTGCTACGGCCTCATGATCCTCCGGCTGAAGAGTGTGCGCATGCTGTCGGGCTCCCAGgagaaggACAGAAACCTGCGTCGGATCACCCGCATGGTCCTGGTGGTGGTTGCCGTCTTCATCGTATGCTGGACACCCATCCACATCTTTGTCATCATCACAGCTCTGATCAATATCCCCAGCTCCACGCTGCAGACTATCACCTGGCACTTCTGCATTGCCCTGGGCTACACCAACAGTAGTCTGAACCCGGTTCTTTATGGCTACCTCGATGAGAACTTCAAGCGTTGTTTCCGTGAGTTTTGCACCCCGAGTCCCTCAGTGTTGGAGATGCAGAACTCGTCCCGATCTGGAGTCACAAGCCGCAAGCTCCCACAGCGCGAACACAACATTGCAAACACAGGAGAAAGGTCCAATCAACAGGTATGACTAGCCTTGGAGGGGTCGTCAGACTCTCGCTCTTGTGGGGGCGTTGCCAACGACGATCTCAACTCAGAGGTCACGCAGGTCACCACAGGGCTCTGACCACGCAAACACAAAGTGACACGTACATCAGACAATCTAGGACACGAGCTCCGTGGCTCCCTCACCACATGAAGACATCGCTGGACAGCAGGTGACAGAAAAGTTATTTACAGCACCAAATGTGCTTCTTGTCCAGCTTCTGTATGGATTTCACCCTATTAACACTGTTTTTCATTGATTGATCTGATCAGCACCAGGCTGGCTTTGGTCACTTCAGGAAGACTCCCCTCTCAACCCACCTGACCCTTTGTTGTAATTCCCTGCCCCCTCTGTCTTcattatttccttttatttttctgtttttatgttgtctCTGTAAAGATGTTTTCTACCCTTTGCTGGATTCATCATTAAATAGACATACAGTAGAGCACTGTATGTTCTCTCTACTGAATTTGACACACTTCTGAATGTACAGAAGGGAAACCCGCTGTGTTACTCACACTGGATCCTTGTACTAAACTTGGATCATCTAAACCAGTAAACACAACGCCCGTTTGCACAGCACACATATCGTGCTATTGCGACAtagtgtgaagtgtgaacacATGGTACTACCCGTGAATGATTAACTACAGCTTAACAGCCATTACACCAGGTATGGGTTCTGAAGAAGTTAACAAGTGAGTCAAGCAGGATTGTACATatattttaatctttaaaaTTGCTTGTGCTTACATGTTGTGCTGTATGCTAAACTTGCCAGTTGCCTTTACAGTAGCTCTACTCAAaattatgtgttttatttttaacgaTCTGTAAAGATGAACATGATTGTATTTATCTCTCGTGTAAAATACTATAACTTCTCTGTTGCTGAAAATAATTTCTGATGATCATGGTGGACGAGCAAGTTATTGTGCTTCTAAATATAACTTTTGTCATATTGAATCTCAGTTGTTAACTGAAGTGATGTATATTAATCAGAAAACAATGTGCGTGAAAACCTTGTGAatttaaaaatggaaatgtaTGCAGAATTTAACTTTATAGACTGTTTCATgttttttgattgtttgttctgacttaaaatgtatgtatgagGATGTCATGTTGTACATACAGGCAGTGTGTATTTTGCATCTCTGCTTTCAATCAATTTTGAAAGATTGTACAGTAGACTACTATTATTTTCAGTCTTTCACACCCCCAGCTAACACAACAGGAAAAAACGTGTAAAAACATGTGGCCAAATTGTCtaagattgaaatattacaaaaaCTGCAGCTGAGTTTTGCAGAAATGGGGCATCGAGTGTCACATGCTGTATTAAATGCAGTGTTTATTGTGcaacaaaatgtatgtttcttTTTGCAAAACACATCATGTGCACAAAACTAATTTTGTGATGTGTCAAGTGTCACCTTTTTTATGATAAGTAATAGTGTTATATTTGCCAAACATTTTGGTTAGTCCTCAACTAAAAGCCATTTCTCTTTAATGTTAAAAGTTAAATCATACTGTTTGAAACTACAAAACGTTTCCTTAGAATACAAAGAACACTAGGAGCTAATTAGTCCTAGAacaatgcttttattttattccatgGATCCTCAACTGGTGAGAATGCTgaatttctgcttttgtttacatctgtttgaaatatatatcatatat

Function

GO:

id name namespace
GO:0007218 neuropeptide signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0038003 opioid receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004979 beta-endorphin receptor activity molecular_function

KEGG:

id description
K04215 OPRM1; mu-type opioid receptor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262490 lncRNA upstream 65998 12178791 ~ 12180953 (+) True G193296
TU262489 lncRNA upstream 68474 12177585 ~ 12178477 (+) True G193295
XR_005637131.1 lncRNA upstream 229298 12007635 ~ 12017653 (+) True LOC120548033
TU262393 lncRNA upstream 229822 12016822 ~ 12017129 (+) False LOC120548033
TU262376 lncRNA upstream 255243 11987274 ~ 11991708 (+) False G193213
TU262594 lncRNA downstream 187222 12465597 ~ 12465813 (+) True G193373
TU262615 lncRNA downstream 488893 12767268 ~ 12767474 (+) True G193392
TU262616 lncRNA downstream 565697 12844072 ~ 12844380 (+) True G193393
TU262619 lncRNA downstream 579425 12857800 ~ 12886083 (+) False G193395
TU262620 lncRNA downstream 579425 12857800 ~ 12932854 (+) True G193395
XM_039783438.1 mRNA upstream 70995 12142395 ~ 12175956 (+) True pcnx2
XM_039783439.1 mRNA upstream 70995 12142395 ~ 12175956 (+) False pcnx2
XM_039783440.1 mRNA upstream 70995 12142395 ~ 12175956 (+) False pcnx2
XM_039783437.1 mRNA upstream 133636 12107436 ~ 12113315 (+) True il22ra2
XM_039783906.1 mRNA upstream 142160 12084750 ~ 12104791 (+) False ifngr1l
XM_039784785.1 mRNA downstream 8638 12287013 ~ 12290530 (+) True sf3b5
XM_039784784.1 mRNA downstream 8639 12287014 ~ 12290233 (+) False sf3b5
XM_039784903.1 mRNA downstream 72948 12351323 ~ 12370045 (+) False LOC120548560
XM_039784898.1 mRNA downstream 72949 12351324 ~ 12371500 (+) False LOC120548560
XM_039784900.1 mRNA downstream 72950 12351325 ~ 12373271 (+) True LOC120548560
XR_005637161.1 other upstream 500249 11717893 ~ 11746702 (+) False sdccag8
TU262145 other upstream 878328 11365388 ~ 11368623 (+) False prepl
XR_005637149.1 other upstream 881347 11357040 ~ 11365604 (+) False prepl
TU262093 other upstream 1094710 11150319 ~ 11152241 (+) True G192994
TU262031 other upstream 1290373 10953139 ~ 10956578 (+) False LOC120548129
TU262524 other downstream 8671 12287046 ~ 12290232 (+) False sf3b5
TU262525 other downstream 8671 12287046 ~ 12290232 (+) False sf3b5
TU262526 other downstream 8671 12287046 ~ 12290232 (+) False sf3b5
XR_005637191.1 other downstream 72949 12351324 ~ 12371270 (+) False LOC120548560
XR_005637192.1 other downstream 72950 12351325 ~ 12371270 (+) False LOC120548560

Expression Profile