RNA id: TU271652


Basic Information

Item Value
RNA id TU271652
length 2064
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G200475
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 6528157 ~ 6539574 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCTGCTTGAACTTGCCCTGCTTCAGGTAACAGGACGCCAGGTTGTTCTTTGTCTTAGCCACGTTGGCGTCGTCGGGGCCCAGTTTGGTCTGGTAGATGTCCAGTGCTCTCATGTAGTAGTATTCCACCTCGTCGTACTTGCCCTGGTTCTGACACAGCAGGGCCAGGTTGTTCAGCTGCTTGGCCACATCTGGGTGGTCCTTCCCCAGCACCTTTTCTCGGATCTCCAGCGCTCTCTTGCACAGGGGCTCTGCTTCCTTGTACTTTCCTCTCTTCCCATACAGGACGGCCAGGTTATTGAGGGTGGCAGCAACctgacagaaacacaaacacatgcattatTTCAAAACCATGTTCCAAACCTGGTGATGAGACTCAATCATATTCACCCAAGTGCAACCACAAGACTCCGCCACAGCAGCAAAGTGCCATTGATCTGGTGAGAGAGTAATtaatgaggaggaaggaggagtgcggaaacaggaagtgatTATGGTGGGCTGTAATTTGATCCCAATCAGCTGTAAGATCAATCTCGCGCAGTCAGGAGGAGGGAGACTACAGAGGTCCCCTCTGATCTCTGATTCAGAGAGGCTCTGGTGGCCATGTGGGCAGAGTGGAAGGAAAGGACGGAGGGAGGGAATGCAGAGGTGAATTGAGGAGTGGAGCAGTGATGGAGGGAAGAGAGAAGGACAGGACGGAGGGCAGTGCATAAGGAGAAATCTACCGCACTTACAAAactctttttctcactttttccagATTGTTATTCCTTACATTTGATTTCTTTTTCAGTATAATATTATATGGATGCTCACTTTTCCTTCACAAACTATAAGAAACCACTGTAAAAGATGAAGATTGTTCCGCACAGCCTCAAATATAAGAATATCAGAGAAGATAAAGATCTTGTGTTTTATGTGTCCAAGGTATACTGCTGCAGATCAGATGATTCGGCTACAAACTGGATGATGGATCTTTAGCCCAAAGTGTTCTTATGAACCACTTCAGTATCTCAACCAGTGGTCTGTGATCCACGCGTTGTCCGTGGCAGTATGGCAGGGCGTCCAGGAAAGATTTGTATGAAAGTATATCTGTTCCGTCACTCACACATTAAGATAGACGACAAAAAAAAGCTGCAATATTTCATGACTTGAATGCAGCTGAAAAAGCACTTTTCATGAACAGGTGGAGTCACAGGGGAAGGGGTCCTTGGTCACGTCAGCTCATCACCAGGAGTACTAAAAGATGGTTTAGAGGCACTGAACTACTCAAAGCTTGAATGGGGTGTTTGTTACGTCCAAAACTAGCTTATATGTCCAAAAGTAGAGCACCACGGCCACCAAGATCGGACATGCTGTTCCTCCCAGTGACCTTCTTCCAGGCTTCTCGTCGTCCACCTGCCAGATTCATGGAGTCCCCAGGTGGCACATTTCCAGGAGGAGAGACTCGAGAGCCAGGTACTTCAAAGAGCTGATGTGAAAGAAGAAACTACAATAAAAAGGCTTCTTGTCTGTAACCCTAGTGTTTGCTGGGGGCACAGTGGCACTTAGCTGGGGGCTCTTAACTATTTCCATATGTCCCCCTGGAAAGACTACAGCCTGTCTAGGATCTTGGTTCAATAACCATTCCACCTTTCACACTAGCTTTAGTATTTTCCCCAGGATCCAGTTTTCATAGCCAGGAGACACCATGGCCCAGAATTTGCCTGCTGCCCAACTGGCAAAGCTCCAGACCACACAATGAGCTATTATGGAAACACGGTGTACATGTTGGTACACGCACAACAGGTGGTGTTTAAACCTGATCCAGGCATCAATAAGCAGAATTCAAGAAAATGTTTCTTAATGGATACCCGGCTCTCATAAATTTGGACCAGTTCTCAATAGTGAACTTTCAAAATagggaagaaaagaaaggaaagtagAAGAGATTGAGAGATAAAGACGATCAGAAACACTGTAGGAGAAAGAGACTAAGAGGCAAAGAGCTGGATTTAAAATGAAGCATAAGGTGAGAGGAATCAGTGTCAAATACCTGGCTTGCCAaaactgtgattttttt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271623 lncRNA upstream 5391 6515903 ~ 6522766 (+) True G200451
TU271645 lncRNA upstream 22617 6502722 ~ 6505540 (+) True G200471
TU271611 lncRNA upstream 121033 6400146 ~ 6407124 (+) True LOC120548987
TU271612 lncRNA upstream 121033 6403452 ~ 6407124 (+) False LOC120548987
XR_005637294.1 lncRNA upstream 121040 6399512 ~ 6407117 (+) False LOC120548987
TU271621 lncRNA downstream 52842 6592416 ~ 6595818 (+) True G200450
TU271627 lncRNA downstream 58200 6597774 ~ 6598392 (+) True G200455
TU271664 lncRNA downstream 92911 6632485 ~ 6634504 (+) True G200484
TU271680 lncRNA downstream 176362 6715936 ~ 6725723 (+) True G200498
TU271692 lncRNA downstream 225665 6765239 ~ 6768572 (+) False LOC120549783
XM_039785498.1 mRNA upstream 102113 6421737 ~ 6426044 (+) True LOC120548986
XM_039786317.1 mRNA upstream 810049 5715238 ~ 5718108 (+) True LOC120549412
XM_039786316.1 mRNA upstream 813030 5573422 ~ 5715127 (+) True LOC120549411
XM_039785398.1 mRNA upstream 957610 5376998 ~ 5570547 (+) True LOC120548886
XM_039786610.1 mRNA upstream 1256369 5271159 ~ 5271788 (+) True LOC120549592
XM_039785109.1 mRNA downstream 30612 6570186 ~ 6587823 (+) False bag5
XM_039785111.1 mRNA downstream 30616 6570190 ~ 6587823 (+) False bag5
XM_039785113.1 mRNA downstream 31758 6571332 ~ 6587823 (+) False bag5
XM_039785108.1 mRNA downstream 31771 6571345 ~ 6587823 (+) False bag5
XM_039785110.1 mRNA downstream 32194 6571768 ~ 6587823 (+) False bag5
XR_005637381.1 other upstream 810049 5715217 ~ 5718108 (+) False LOC120549412
TU271419 other upstream 813040 5709685 ~ 5715117 (+) False LOC120549411
XR_005637303.1 other upstream 1340750 5100468 ~ 5187407 (+) False apoba
TU271252 other upstream 1474415 5041959 ~ 5053742 (+) True G200129
TU270958 other upstream 3004268 3496080 ~ 3523889 (+) True G199885
TU271624 other downstream 28702 6568276 ~ 6571757 (+) True G200452
TU271673 other downstream 138084 6677658 ~ 6682591 (+) True G200492
TU271685 other downstream 192674 6732248 ~ 6734946 (+) False vps29
TU271684 other downstream 197736 6737310 ~ 6747395 (+) True vps29
XR_005637545.1 other downstream 282539 6822113 ~ 6822319 (+) True LOC120550058

Expression Profile