RNA id: XM_039785498.1


Basic Information

Item Value
RNA id XM_039785498.1
length 2815
RNA type mRNA
GC content 0.51
exon number 4
gene id LOC120548986
representative True

Chromosome Information

Item Value
chromosome id NC_053131.1
NCBI id CM020928.1
chromosome length 36057207
location 6421737 ~ 6426044 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCTGGGCGTCCGACGAGATCACgacaggaggaaaaaaaaaagcagaaaaatggAGCAGACCTTAAAAACTCCCGACAAATGACTATTTACCTCGGATGCGGACGGCAGCAACGGAACGTCGTAGCTGGCTTCGTGTAGGTCGACAGTCGGTtcggagaaagagggagaaataTCGGTGAGGATTAACGCAGAGGCGGGGTGGGAAAAATAGGAAGGACTTAATAGCTTCGACTATCCGGATTACCCACTCGCTGAAAAAGCGAAAACAAGCGACGCTTCGTGGACATTTCTCCGTCCAGAGAGGATGAAGTGACCGCCAGGAAACGGAGAAAAAGTGCTTGTGGTCGAAGTTGGAAGCGGAGGAGGAAACCGACTCCTCCGGGCCTGAACGGATATTTAGATGTTGTCGTGTAAACTTCGCTGTCGATGCCGTTTTAAAGCGGCGTTATAGGAGCAGAATTTCACCCAGAAAACGTTGAATTCTACGCCGAGCAAGCACCCCAACAGTGATTCAGTTCGCCGGATACCAACACGAAGAAGATTCTTTGCTTGTGCCGATGCCAACGGCAGACTGCAGGTTGCTCCATCATGGCCGGATCATGAGGTGTTTGACTTATCTACTCCTACTTCCAGAAACCCTGAAAAAGTCTAAGAAGGTCGGCAAGCTCCCGGGCAGGCTGCCGGTATGTTATGAGATCCTGACTCTGTCCCTGACGagtaagaagaagaagcagcagcagaaggaggaggaggagaagatggCTGCGGAGTTGTACCCCGCCGCTAACACCAACAACCCAAACCTGTCCAACGGCACGACGGTAGCGGACACCGAGAAGACCAAGGAGGTACACGTGAGCCAGGCCAGCAGCGCGGCGACCACCCCGACCACCCAGCagaacatcaacaacaacaacgtcgACCCGCCGAGCTGGCAGTGCAGCCACCCCACACTGAGAGAGAGGAATGCCTTGATGTTTAACAATGAGCTGATGGCTGATGTCCACTTCATTGTTGGCCCCTTGGGGGAATCTCAGAAGGTTCCAGCACACAAGTATGTGCTGGCTGTGGGAAGCTCCGTCTTCTGTGCCATGTTTTATGGCGATCTGGCGGAGGAGGAGTCAGAGATCCATATTCCAGATGTGGAACCTGCTGCTTTTCTAATTCTGCTGAAGTACATGTACAGCGATGAGATCGACCTGGAGGCAGACACGGTGCTGGCCACCCTGTATGCCGCCAAGAAGTACATTGTTCCTGCACTGGCCAAGGCCTGCGTCATCTTCCTGGAAACGAGCCTGGAGGCCAAGAACGCCTGTGTGCTGCTCTCCCAGAGCCGCCTGTTCGAGGAGCCTGAGCTGACGCAGCGCTGCTGGGAGGTGATCGACGCTCAGGCCGAGCTGGCGCTGTGCTCAGAGGGCTTCTGTGAGATCGACCTGCAGACTCTGGAGATCATCCTGCGACGGGAGACGCTCAACATCAAGGAGGTGGTGGTGTTTGATGCTGTTATGAACTGGGCCACAGCGGAGTGCAAGAGACAGGGTCTGGGGCCCACCACCCGCAACAAAAGAAATGTGCTTGGCAAGGCGCTGTTCTTAGTGCGCATCCCATCCATGAGCCTGGAGGAGTTTGCTGACGGGGCGGCGCAATGTGATATCCTGACACTGGAGGAGACTCACAATGTGTTCCTGTGGTACACTGCGGCTAAAAAGCCTGATCTGGAATTCCCTCTGACTGCACGGCAGGGTTTGGTGCCTCAGAGGTGCCACCGCTTTCAGTCCTCAGCCTACCGGAGCAACCAGTGGCGCTACCGCGGCCGGTGCGACAGCATTCAGTTCGCGGTGGACAAGAGGATCTTTATCGCCGGTCTGGGGCTGTACGGGTCAAGCGGCAGCAAAGCAGAGTACAGCGTCAAAATCGAACTGAAGAGACAAGGGGTGATCCTGGCGCAGAACCTGACAAAGTTTGTGTCGGATGGGTCGAGCAGTACGTTTCCGGTGCGGTTCGAGCATCCTGTTCAGGTGGAGCAGGACGCGTTCTACACAGTGAGCGCCGTGCTGGACGGGAACGAACTGAGCTATTTTGGCCAGGAGGGCATGACGGAGGTGCAGTGTGGGAAGGTGACATTTCAATTCCAGTGCTCCTCCGACAGCACCAACGGGACCGGAGTACAGGGAGGACAGATCCCCGAGCTTGTGTTCTATGCATAAGCCGCTCCGGACTGCTAATGGATAACTAGCTTTATCCTCGCCTCCCAGCCTTCAAAGTAATGTAGCATTAAAGACACTTGACTAATGTCACACTAAAAGGCCTGGTTAGTTCTTTGAGAGACTATTTTAAAAGTCAAGGAGCTGttgttatttaatttaatgttatttttttatttaaatactgggttaacgttatttgctctgtCGCCTGTGTTCAAGGGCTGCGGCTGCTGTAGAAACAACATTAATAGAGTCATTTGTGGTTATGTAATCAACCTGAGCTCCACAACTGAAACAAGTAGGGACCGCTTCAAATTGTGTAATTGCCAGTCTATATACAATGTTGTTGCTATATAGTCTTAGCAGCAATGTTACACAAGGAGCAAACTTTATGTAGTGTTATGATTCTGAAtgcaaaaaaaagtagaaatcTTGTCAGAAACAGAGTTGTTTTGCACTTGAGGACGGCCTCATAAACATTGTCTTTTGTAAAATACAATTTAACTGTTAACAGCTTGATGCTGTTAAAGATGACCAGATGTGTTCTGTACAAGAATGCTTATACACCTGATGATAAAACATAAAGGTTATAATGTGATTGAAGTTA

Function

GO: NA

KEGG:

id description
K10478 BTBD3_6; BTB/POZ domain-containing protein 3/6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271611 lncRNA upstream 14613 6400146 ~ 6407124 (+) True LOC120548987
TU271612 lncRNA upstream 14613 6403452 ~ 6407124 (+) False LOC120548987
XR_005637294.1 lncRNA upstream 14620 6399512 ~ 6407117 (+) False LOC120548987
XR_005637293.1 lncRNA upstream 14620 6400152 ~ 6407117 (+) False LOC120548987
TU271547 lncRNA upstream 304070 6117212 ~ 6117667 (+) True G200380
TU271645 lncRNA downstream 76678 6502722 ~ 6505540 (+) True G200471
TU271623 lncRNA downstream 89859 6515903 ~ 6522766 (+) True G200451
TU271652 lncRNA downstream 102113 6528157 ~ 6539574 (+) True G200475
TU271621 lncRNA downstream 166372 6592416 ~ 6595818 (+) True G200450
TU271627 lncRNA downstream 171730 6597774 ~ 6598392 (+) True G200455
XM_039786317.1 mRNA upstream 703629 5715238 ~ 5718108 (+) True LOC120549412
XM_039786316.1 mRNA upstream 706610 5573422 ~ 5715127 (+) True LOC120549411
XM_039785398.1 mRNA upstream 851190 5376998 ~ 5570547 (+) True LOC120548886
XM_039786610.1 mRNA upstream 1149949 5271159 ~ 5271788 (+) True LOC120549592
XM_039785397.1 mRNA upstream 1152050 5268788 ~ 5269687 (+) True LOC120548885
XM_039785109.1 mRNA downstream 144142 6570186 ~ 6587823 (+) False bag5
XM_039785111.1 mRNA downstream 144146 6570190 ~ 6587823 (+) False bag5
XM_039785113.1 mRNA downstream 145288 6571332 ~ 6587823 (+) False bag5
XM_039785108.1 mRNA downstream 145301 6571345 ~ 6587823 (+) False bag5
XM_039785110.1 mRNA downstream 145724 6571768 ~ 6587823 (+) False bag5
XR_005637381.1 other upstream 703629 5715217 ~ 5718108 (+) False LOC120549412
TU271419 other upstream 706620 5709685 ~ 5715117 (+) False LOC120549411
XR_005637303.1 other upstream 1234330 5100468 ~ 5187407 (+) False apoba
TU271252 other upstream 1367995 5041959 ~ 5053742 (+) True G200129
TU270958 other upstream 2897848 3496080 ~ 3523889 (+) True G199885
TU271624 other downstream 142232 6568276 ~ 6571757 (+) True G200452
TU271673 other downstream 251614 6677658 ~ 6682591 (+) True G200492
TU271685 other downstream 306204 6732248 ~ 6734946 (+) False vps29
TU271684 other downstream 311266 6737310 ~ 6747395 (+) True vps29
XR_005637545.1 other downstream 396069 6822113 ~ 6822319 (+) True LOC120550058

Expression Profile