RNA id: TCONS_00071334


Basic Information

Item Value
RNA id TCONS_00071334
length 2610
RNA type mRNA
GC content 0.45
exon number 3
gene id XLOC_036507
representative True

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 28297066 ~ 28304534 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCCAGACGCACGGCCCGGGAGCGACAGGAGAGCGATgatgactcggacacagacctGCTGCTCGCGGCGCTTTCGCCGGAGGAAGTGGAGAAGCTCGAGCGTGAACTCGTTTATATCGACCCCGACCCGACAGTACCTGTGGGACTCCGCCAGAGGAACCAGACGGACAAACTCCCGTCCAGAGGATATGACAGAGAAGCGATGCTAGACTACTGCGAGCGCCAAACCAAGAAACTGATCCGGAGAGAACTGAGCGCAgagGGAGGGGATGGAAGAAGGAGAGAGCGACTTCGCCGGATGAGGAGCAGAGAGTTTTCCAGATCACAGAGCGGCGATCCTCCGGACACAGAGAGCAGAAATGCTGAAAGTGAAAAAGATAAGGAGAGAACGAGAAAATGGGAGGATGACTCTAAAGATTTATCTGATGAGGGAAAGAATAAACGGGAGGAAAAGAGAACAGGTGATAAGATGGAAAGTGGCAAAGAACTTTCTAGGAAAGAGAAAGGTGGCAGCAAAACTCTAGACCTCATCTCCAAACTGCAAGAGAAACAAGAGGAGAAGAAAGACAGAGGGAGGAAGGATGACAAGAAAGTGAACGAAAACTCCAAAATACGAGGGGTTGTCTCCAAACTTCAGGGGAATAAAGTGACTGaggaaaaaaaggacaaaaagaCGGACGTCAAACAGCAAGATGGAAGCAGAACTAAAGCTTCAGAGGTACCCAAAAACAACAAAGCAGGACGAGTAAACTTAATAGATGCAGAAAAAGACGACAAAAACAGCAGATTTAGTACAGTTGAAGAAACAAGTTTGGATAAAACCAGACCTCAAAAGGAGAGAGAACAAGTGAAAGCACCAGAAAACAGCAAGGCCAAGATTTTTACCAGTTCTTTCCATGAAAGCTCAGGGAACTGTCATGGAGCGGACACCTGTTCACTTACTACTGAGGAGGATGAGTCTTATAGTGAAGATCTGGACAGTGACACTGGCTCCAGCATGTTTGACGATCTTCTAGAGCAGGTTCGCAGTGACGATCCTGAACTAACTGAGGTCAACGTCAACAATTCAGATGCCATTAAAACAGATACCCTGATTCAGTTTGCAGAGGGTCTTCGCAGTAACACTCACATCAAAACCTTCTGCCTTGCAAACACAAGAGCGGATGATCATGTCGCATTCGCCATCGCTAAAACATTGCGAGAAAACTCAACCCTGACCGGCATCAACCTCGACTCTAATCATCTGACAGGCAAGGGCATCCTGGCCATCATCAACTCTCTTCAACACAACAGCGCACTGATGGAGCTGAGGTTTCATAACCAGAGACACATCTGCGGAGGGAAGACTGAGATGGAGATGGCCAAAGTCTTACGTGACAACTCTTCCCTGCTGAAGTTGGGATATCACTTTGAGTTAGCCGGGCCGAGGATGGCCATGACAAACATCTTGAGCCGAAACATGGACAGGAAACGGCAGCAGCGATTAGAAGCGCAAAAACTCGCCGGACATGAGATCAACTCCACTGCACGTGAAGAAAATAAGAGCTCAACTAATAAAGCTAACTCAAAAACATTGTCCACTCCAAAGAAAGACTCTAAATTTGCTTCCCTATCAAAATTCACCTCTGCTCAAGAAAATTCCAAAGCTTCGCCGACAAAGCCACTGTCTAAACTCCTCACCACTGAGGTAACAGGAAGCAAAAAAGGTGCAACAGGATGTGGGCAagcccctcctcctcctccccctccTCCAGGTCCAGCATTAGATGTTCAGGCACTAAGGAGGTCTTTGACCCCAGTCTCTCAGAGGAAACCAGATGGCAGTACAGCTGtccgacagacagacaggagcTCCAGAGATCAGCTCCTGGACTCTATCAGAAACTGCAGCATGAATGCTCTCAAGAAGGTTGAGATTCCCAAGCGGTTGAGATAACATCTGTCCAGTGCACGTGTGTCTGATTCAGATTCACCTGCAGTCTTCCAGAGCTCTGTTATGATGGAGGAGTCACTGAATCGTCAAGATGAGATCCCTTCTCTACATGCTCAGACATTCAGACACTTTAGACACATGATATGTAAACATCTGAGGTGTGAGGCTTTACCATATTAGTGTGATTATCCCTGGACTGATAGGAAATGTCAAAGGccaaatcaaaaaaaaaactttttttggaatGGGTAATTGAAATATAATAGCCATTTCATTTTAGAATTCTGGCATACTTTAAGATACTTTTATCTTCTACGATGTGTCTTGTAGCATCTCCACTCATCAATTTGCAAATATCATGCCATAACATTTTCAGCTGAAGGTTCATGATCTCATGCTTTCTGCAGCACATCTTTAATCAGTTAAATGTTGCATTAAACAGAAATGTCAGTCAgtgtatttaaatgcattaatgaaTTATAGTGTATGCAGAGAATAAAGCAAAAAATCTCACATTTTTGAGCAACATTTATTATGTATCCTGCAAATCAAGTTTATGTGTGATacattaaaaatgtcactttagaactATGTTGATTGTAAAAATGGAAATTGCCTTAGACTTGATCCATCTTTAATGTTACAGTAGTTCAATAAACCTCAACAAACAACCAG

Function

GO:

id name namespace
GO:0051694 pointed-end actin filament capping biological_process
GO:0006936 muscle contraction biological_process
GO:0007015 actin filament organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0030016 myofibril cellular_component
GO:0005523 tropomyosin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-348 Predicted to enable tropomyosin binding activity. Predicted to be involved in actin filament organization; muscle contraction; and myofibril assembly. Predicted to act upstream of or within pointed-end actin filament capping. Predicted to be active in striated muscle thin filament. Orthologous to human LMOD1 (leiomodin 1).

Ensembl:

ensembl_id ENSDART00000078545

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00072475 lncRNA downstream 68710 28169137 ~ 28228356 (-) False XLOC_036503
TCONS_00071325 lncRNA downstream 68721 28223652 ~ 28228345 (-) True XLOC_036503
TCONS_00071324 lncRNA downstream 68803 28207354 ~ 28228263 (-) False XLOC_036503
TCONS_00072063 lncRNA downstream 722983 27551556 ~ 27574083 (-) False XLOC_036497
TCONS_00072064 lncRNA downstream 723023 27572547 ~ 27574043 (-) True XLOC_036497
TCONS_00072476 lncRNA upstream 157970 28462504 ~ 28465453 (-) True XLOC_036513
TCONS_00072477 lncRNA upstream 223795 28528329 ~ 28546676 (-) True XLOC_036514
TCONS_00072478 lncRNA upstream 422340 28726874 ~ 28728007 (-) True XLOC_036516
TCONS_00071345 lncRNA upstream 1276961 29581495 ~ 29635923 (-) True XLOC_036517
TCONS_00072065 lncRNA upstream 1387176 29691710 ~ 29693950 (-) True XLOC_036521
TCONS_00071332 mRNA downstream 22514 28267547 ~ 28274552 (-) True XLOC_036505
TCONS_00071331 mRNA downstream 22815 28267546 ~ 28274251 (-) False XLOC_036505
TCONS_00071330 mRNA downstream 37287 28256278 ~ 28259779 (-) True XLOC_036504
TCONS_00071328 mRNA downstream 37300 28243226 ~ 28259766 (-) False XLOC_036504
TCONS_00071327 mRNA downstream 37300 28243226 ~ 28259766 (-) False XLOC_036504
TCONS_00071335 mRNA upstream 679 28305213 ~ 28342313 (-) False XLOC_036508
TCONS_00071336 mRNA upstream 2005 28306539 ~ 28339155 (-) False XLOC_036508
TCONS_00071337 mRNA upstream 2005 28306539 ~ 28342487 (-) False XLOC_036508
TCONS_00071338 mRNA upstream 25515 28330049 ~ 28339155 (-) False XLOC_036508
TCONS_00071339 mRNA upstream 31746 28336280 ~ 28339151 (-) True XLOC_036508
TCONS_00071333 other downstream 1270 28294476 ~ 28295796 (-) True XLOC_036506
TCONS_00071329 other downstream 41425 28253838 ~ 28255641 (-) False XLOC_036504
TCONS_00071322 other downstream 471889 27823381 ~ 27825177 (-) False XLOC_036502
TCONS_00071318 other downstream 568980 27727970 ~ 27728086 (-) True XLOC_036501
TCONS_00071315 other downstream 690113 27596435 ~ 27606953 (-) True XLOC_036498
TCONS_00071349 other upstream 1383977 29688511 ~ 29698282 (-) True XLOC_036520
TCONS_00071360 other upstream 1857958 30162492 ~ 30162633 (-) True XLOC_036529
TCONS_00071361 other upstream 1862901 30167435 ~ 30167525 (-) True XLOC_036530
TCONS_00071362 other upstream 1863096 30167630 ~ 30167704 (-) True XLOC_036531
TCONS_00071377 other upstream 2695380 30999914 ~ 31000028 (-) True XLOC_036539

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000347_00480073_00484095.mRNA True 1417 mRNA 0.51 3 CI01000347 480066 ~ 484095 (-)