XLOC_036504 (ddx20)


Basic Information

Item Value
gene id XLOC_036504
gene name ddx20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 28241100 ~ 28259779 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00071326
ATGCCAATCATGAGTGTTTGTCGCCCTCTGCAGGACGTGGCTCGATATTCCAGGCAGCGGTTCTGTATGTGTGCGCAGGAGGGCGCAGTGATTCACAGCTCATGTCATTTATTCACCGTAGAAGAAACAGAACGTTGTCGCGATAGAAACATGGCGGCATCTGTGAAAGCAGCGCATGAGCTGCAATCGAGAACCCGGACGGATGATGTTTTGATTAGCGGCGGTGTCGAGTTCAGCTCTTTACTCCTCTCAAAACCCGTGCTTGAGGGTTTATCTGCTTCCGGTTTTCAGAGACCCTCTCCCATCCAGCTAAAGGCAATCCCGCTGGGAAGATGTGGACTCGATCTAATTGTTCAAGCCAAATCTGGCACAGGAAAGACCTGTGTGTTCACCACCATCGCCTTGGACTCTCTTATATTGGAAAACGCAACTACACAGGTGCTGGTTTTGGCCCCCACTCGGGAGATTGCAGTGCAGATTCACGCTGTTGTCATGGCGATAGGCAGTGCTATGGAGGGTTTGGAGTGCCATGTGTTCATTGGTGGTCGACCTATCAGTCAAGATAAACAGCACCTGAAGAAGTGCCACATTGCTATTGGGTCACCAGGTCGTATTAAGCAGCTAATTGAGATGGGAGCCCTGATGGTGTCCTCCATTCGCTTGTTTGTTTTGGATGAGGCTGATAAACTCCTGGAGGACGACAGCAGCAGCAGCTTTCAGGAGCAGATCAACTGGATCTACTCCTCTCTaccagcaaataaacaaatgttggcTCTTTCTGCCACCTACCCAGAGTCTTTAGCACAACAGTTGTCAAGATACATGAGAGAGCCCACGTTTGTGCGACTGAACCCAACTGACCCTGGACTCCTCGGACTGAAGCAGTATTATAAGATTGTGCCATCTCATTCATTGCCTCATAAAGTTTTTGAGGAGAAGGTGCAGAGTCTTCTTGAACTCTTCAGTAAAATCCCATTTAACCAAGCGCTGGTGTTCTCGAATCTTCATACCAGAGCTCAGCATCTGGCAGATATCCTCTCCTCTAAAGGTTTGCCTGCAGTCTGCATCTCAGGTGGTTTAAGTCAGGATCAGAGGTTAGAGGCGATGTGGAAGCTGAAGCAGTATCAGTGTCGAGTTTTAATATCCACTGATTTGACGTCACGTGGAATTGATGCTGAGAAGGTGAACTTGGTGATTAATCTGGACGTTCCTCAGGACTGGGAGACCTACATGCACCGTATTGGTCGTGCTGGACGTTTTGGTACTCTGGGGGTTGCCGTGACCTACTGTTGCCATGGGGAGGAGGAGAACAAGATGATGGCCATCGCTCAGAAGTGCTCTCTGGATCTCATGCATTTACCAGATCCAATACCTCCAGGCATCATGGAAGAAGCGTGTGACCATGATGTGATCATAGAAACTCTTTCAAAACCAAAGATTCCTGACAATTTCAAAccagagaagaagaaaaaggCTAAATCAGAACAGATGAAGTCTAAACCCTCTAGAGAGTCTCACATCTCTGTGGTCATCACAGAAAGCGTGACCGGTGACAAATCATGCAGTCGAGCTGAAACCAAGACTAAAAATCATTCTTCCAAACCTGGGAGGCAAAAACAAATGGCGCCTGCTGCAAACCTCCAACATGACTCGACTATTACTCAGAAACAGCAGAATGACACCCTTCCCAAAATTCCTCCTTTGTCATCCTTTAAGTCGCACACAGGGAAGAGAATAACCTTCGACGATGCTTTGGTGGATTATGAGACCTTTATAAGAGAAGGTCCGGGAAGATCTGTTGAAATCATTCACCAGTATGATGGTTTCTACAGGAGTCAAGATAAAGTTAATGGTCTTCATGACGCCCATGATGAAGATGAGGCTTCTGAATCATACGTTCTAGAAGAATCACAGTCCCATCAAGATCTTCCACCAGCGCAGGAGGTTTCAGAGTTGTCCTCAGAGCAGAAGACATCTAGTGAATCCTCTTCTGAGTCTGAGATGGAAGTGGAGAGTGAATCAAGCTCTTCTGTGCCTAGCAAGTCTACACTTGAAGCACTTCCAGATAATAAAGTTTCGCTTGTACGTAATCATTCAGAATTAGCTGAATTAGCTTTACCTTCAACCAGAGTACCACAACAGGCCACCAGAAGCAAGAAAAGGCCATGTCAGCCTCAATCCCAGGACACCGCTCACCATCACAATCTTCCTCATAAACACCGAACAGCCTCCAAATCTAGCCGGAGGCCAACAGGACCAAAGCGGAGAACAAGAGAGACTGATGAGACTGAGGAGGAAGAGGCTGGACAGGATTATTGGAGCTCGTACAGGGCCTGGGCTGAATATTACAATTCATATTATCACCATTCGCCCTATAATTGGATGACTGCGTTTTATATGAATTCTGTGTACATAAAGGAAATGATGAAGCACTAGAAAAGTCAATCTTTGTAATGTtcctaaatgtattttatacatattcCTGTAGCTCCCCAATAAAGATGAGTTCCTAACATTTGTGCCATCAAATgatcatttataatattttgttgtaGCTAGCTTCATGTACATTTTACATAAACCGCACATGGATATATAAAACTTTTCACATATTTTTAGTGCAATCAGAGACACTCTAGTCCAAATCTCATATTTGATGGTGCACTGATTAGCAGTGCTCTCCAAAATCAGCCGAAGACCTCCAGAATTAGCAGAAGGTTAAGGCATGAATGGGTAAATGACCTATCAAGACTTATTTGAgatgtttaatgatttatttatgttggcttgagaaagccaacatactgttatactactctgtccttgaaaacaaacatatctcctcctaggccattcgtgccacaaggcccaaatgtggtcaaaatgtgccatCTACATttaagattgttgctatatctcctcatgcctataaaacgtattgtttttttttttttataaaaaatgttaaatattaaatttttataatccgagcatataaaataattatacaagccccaaatttggccaaaagctgtatttagatgtgttagattttgttgctatatctttaaggtttatcagacttatagttttccaataaataatttttaagcattatttttctcaaaatatggcaagccatttttgacttaaactatatatttttttactgatatggcaagccatttttgcatgtatcactttcacacttattattttcttaatcaggggtcgtcacaacggaatgaaccgccaacttatccagcatttgttttacacagcgaatgcccttccagccgcaacccaacaccaggaatacataatgttcaagtccagtttttgagactcataaagactgtcatagaaacatcggggttgattaagatcactcatattgccaagcaGCTTTgttgtatcatcactaacctgtcaaatgtccccatagcaataaaacagtataacctagcaactatttaaaaatagcaatatctctacatcagaacatcgtagggacctgggcattggcttgtttgactcatgctagcaaatgggacttcctgtgtactatgcatggtaacaatgataatggaagccaagtgctaataacgattagctacatgctatgaatgattatctaaatgcaataacatatgctagaaatgcctactaagtattagcatttgatcaaacatgtacacgagcattgccatttagcaactgcttagcaaccacctaaaaatgccataattgttttagcaactgcctagcaaccacttagcaaccgccgccgtgcttcctgccaactgccattcccagtcctagcgcagtcacgttggctttctcaagccaacatcaaagtttatcaataaactttaggTTTTAGTTTTAGTATGCATCGCAATTACTTAATCCTGATTGGACAATTGCAGTAGTCAAACAGTTCTATACATATTTTGATATAtgtatatttgatatatatatatatatatatatatatatatatatatattttaaaaatgctcaacATCGTTTGATCTGTTTCTAGTATTGGATCTTGGATACCGTTCTAGTATTGCcatgtagattcaacaaggtgctaaAATTATAATACTTGATGCACcagcgattattattattattttttatttaattgttttttttattgtttaattaattttttaaattatttttatttattttttataattttttaattgtgcttttatttattttttcaatctgCCTATTTTAACCAACATTTCATAATATCCTAAATAGAAACACAATAggaatgccaagatgtgcataaatttagaAAATGTGCATACACTTATGCGAACAACAACTGATTAGGATAAAGCAGAATGACGCCCTTGTCAAAATTCTTCCACTTTCCTCCTTTAAGTCGCACACATGAAAGAGAACGACCTTTGATGATGCTTTGGCAGATTATGGGACCATCATAAGAGAAGGTCCTGGAAAATCTTTCAATTCATCCACCAGTATGAGGTTTTAACAGGAGTCAAGATGAAGTTCTTGGTTTGCATGACGCCCAAGATGAAGATGAGGCTTCTGAACCATACGTTCAAGAAGAATCACAGTCCCATTAAGATCTTACTCCAGTGCAAGAGGTTTTAGAGT
>TCONS_00071328
CGCAAACAAAACAGATAAGTGAAGAAGAACCGAGCCGGTGAAACGCGCACTAATTTGTTCATAACGCGAAGATACAATAATTACATACACGTACATATCAAAGAATACTGTTAACACAGAACCACACCTGTGCTGTGAAAGTAAGTGCCGATTAAGATCAAGAAAATCTCACCAGTTCATTTCTTAGACGATGAAGGTTGCTCTTCATGTCATCGATATCCGTTTTCCCTTCCTCCATGTTTGCCGACATAACGTTACagaatgaaattattttaatgcTACAAGCAGGTTGATTGATTTAAATCTCCATCCAATTTGATGTCGCTGCCGCTAAGATCTTTGGTTTCCTTCGCTTTAGTTTCAGGACGTGGCTCGATATTCCAGGCAGCGGTTCTGTATGTGTGCGCAGGAGGGCGCAGTGATTCACAGCTCATGTCATTTATTCACCGTAGAAGAAACAGAACGTTGTCGCGATAGAAACATGGCGGCATCTGTGAAAGCAGCGCATGAGCTGCAATCGAGAACCCGGACGGATGATGTTTTGATTAGCGGCGGTGTCGAGTTCAGCTCTTTACTCCTCTCAAAACCCGTGCTTGAGGGTTTATCTGCTTCCGGTTTTCAGAGACCCTCTCCCATCCAGCTAAAGGCAATCCCGCTGGGAAGATGTGGACTCGATCTAATTGTTCAAGCCAAATCTGGCACAGGAAAGACCTGTGTGTTCACCACCATCGCCTTGGACTCTCTTATATTGGAAAACGCAACTACACAGGTGCTGGTTTTGGCCCCCACTCGGGAGATTGCAGTGCAGATTCACGCTGTTGTCATGGCGATAGGCAGTGCTATGGAGGGTTTGGAGTGCCATGTGTTCATTGGTGGTCGACCTATCAGTCAAGATAAACAGCACCTGAAGAAGTGCCACATTGCTATTGGGTCACCAGGTCGTATTAAGCAGCTAATTGAGATGGGAGCCCTGATGGTGTCCTCCATTCGCTTGTTTGTTTTGGATGAGGCTGATAAACTCCTGGAGGACGACAGCAGCAGCAGCTTTCAGGAGCAGATCAACTGGATCTACTCCTCTCTaccagcaaataaacaaatgttggcTCTTTCTGCCACCTACCCAGAGTCTTTAGCACAACAGTTGTCAAGATACATGAGAGAGCCCACGTTTGTGCGACTGAACCCAACTGACCCTGGACTCCTCGGACTGAAGCAGTATTATAAGATTGTGCCATCTCATTCATTGCCTCATAAAGTTTTTGAGGAGAAGGTGCAGAGTCTTCTTGAACTCTTCAGTAAAATCCCATTTAACCAAGCGCTGGTGTTCTCGAATCTTCATACCAGAGCTCAGCATCTGGCAGATATCCTCTCCTCTAAAGGTTTGCCTGCAGTCTGCATCTCAGGTGGTTTAAGTCAGGATCAGAGGTTAGAGGCGATGTGGAAGCTGAAGCAGTATCAGTGTCGAGTTTTAATATCCACTGATTTGACGTCACGTGGAATTGATGCTGAGAAGGTGAACTTGGTGATTAATCTGGACGTTCCTCAGGACTGGGAGACCTACATGCACCGTATTGGTCGTGCTGGACGTTTTGGTACTCTGGGGGTTGCCGTGACCTACTGTTGCCATGGGGAGGAGGAGAACAAGATGATGGCCATCGCTCAGAAGTGCTCTCTGGATCTCATGCATTTACCAGATCCAATACCTCCAGGCATCATGGAAGAAGCGTGTGACCATGATGTGATCATAGAAACTCTTTCAAAACCAAAGATTCCTGACAATTTCAAAccagagaagaagaaaaaggCTAAATCAGAACAGATGAAGTCTAAACCCTCTAGAGAGTCTCACATCTCTGTGGTCATCACAGAAAGCGTGACCGGTGACAAATCATGCAGTCGAGCTGAAACCAAGACTAAAAATCATTCTTCCAAACCTGGGAGGCAAAAACAAATGGCGCCTGCTGCAAACCTCCAACATGACTCGACTATTACTCAGAAACAGCAGAATGACACCCTTCCCAAAATTCCTCCTTTGTCATCCTTTAAGTCGCACACAGGGAAGAGAATAACCTTCGACGATGCTTTGGTGGATTATGAGACCTTTATAAGAGAAGGTCCGGGAAGATCTGTTGAAATCATTCACCAGTATGATGGTTTCTACAGGAGTCAAGATAAAGTTAATGGTCTTCATGACGCCCATGATGAAGATGAGGCTTCTGAATCATACGTTCTAGAAGAATCACAGTCCCATCAAGATCTTCCACCAGCGCAGGAGGTTTCAGAGTTGTCCTCAGAGCAGAAGACATCTAGTGAATCCTCTTCTGAGTCTGAGATGGAAGTGGAGAGTGAATCAAGCTCTTCTGTGCCTAGCAAGTCTACACTTGAAGCACTTCCAGATAATAAAGTTTCGCTTGTACGTAATCATTCAGAATTAGCTGAATTAGCTTTACCTTCAACCAGAGTACCACAACAGGCCACCAGAAGCAAGAAAAGGCCATGTCAGCCTCAATCCCAGGACACCGCTCACCATCACAATCTTCCTCATAAACACCGAACAGCCTCCAAATCTAGCCGGAGGCCAACAGGACCAAAGCGGAGAACAAGAGAGACTGATGAGACTGAGGAGGAAGAGGCTGGACAGGATTATTGGAGCTCGTACAGGGCCTGGGCTGAATATTACAATTCATATTATCACCATTCGCCCTATAATTGGATGACTGCGTTTTATATGAATTCTGTGTACATAAAGGAAATGATGAAGCACTAGAAAAGTCAATCTTTGTAATGTtcctaaatgtattttatacatattcCTGTAGCTCCCCAATAAAGATGAGTTCCTAACA
>TCONS_00071327
CGCAAACAAAACAGATAAGTGAAGAAGAACCGAGCCGGTGAAACGCGCACTAATTTGTTCATAACGCGAAGATACAATAATTACATACACGTACATATCAAAGAATACTGTTAACACAGAACCACACCTGTGCTGTGAAAGTAAGTGCCGATTAAGATCAAGAAAATCTCACCAGTTCATTTCTTAGACGATGAAGGTTGCTCTTCATGTCATCGATATCCGTTTTCCCTTCCTCCATGTTTGCCGACATAACGTTACagaatgaaattattttaatgcTACAAGCAGGTTGATTGATTTAAATCTCCATCCAATTTGATGTCGCTGCCGCTAAGATCTTTGGTTTCCTTCGCTTTAGTTTCAGGACGTGGCTCGATATTCCAGGCAGCGGTTCTGTATGTGTGCGCAGGAGGGCGCAGTGATTCACAGCTCATGTCATTTATTCACCGTAGAAGAAACAGAACGTTGTCGCGATAGAAACATGGCGGCATCTGTGAAAGCAGCGCATGAGCTGCAATCGAGAACCCGGACGGATGATGTTTTGATTAGCGGCGGTGTCGAGTTCAGCTCTTTACTCCTCTCAAAACCCGTGCTTGAGGGTTTATCTGCTTCCGGTTTTCAGAGACCCTCTCCCATCCAGCTAAAGGCAATCCCGCTGGGAAGATGTGGACTCGATCTAATTGTTCAAGCCAAATCTGGCACAGGAAAGACCTGTGTGTTCACCACCATCGCCTTGGACTCTCTTATATTGGAAAACGCAACTACACAGGTGCTGGTTTTGGCCCCCACTCGGGAGATTGCAGTGCAGATTCACGCTGTTGTCATGGCGATAGGCAGTGCTATGGAGGGTTTGGAGTGCCATGTGTTCATTGGTGGTCGACCTATCAGTCAAGATAAACAGCACCTGAAGAAGTGCCACATTGCTATTGGGTCACCAGGTCGTATTAAGCAGCTAATTGAGATGGGAGCCCTGATGGTGTCCTCCATTCGCTTGTTTGTTTTGGATGAGGCTGATAAACTCCTGGAGGACGACAGCAGCAGCAGCTTTCAGGAGCAGATCAACTGGATCTACTCCTCTCTaccagcaaataaacaaatgttggcTCTTTCTGCCACCTACCCAGAGTCTTTAGCACAACAGTTGTCAAGATACATGAGAGAGCCCACGTTTGTGCGACTGAACCCAACTGACCCTGGACTCCTCGGACTGAAGCAGTATTATAAGATTGTGCCATCTCATTCATTGCCTCATAAAGTTTTTGAGGAGAAGGTGCAGAGTCTTCTTGAACTCTTCAGTAAAATCCCATTTAACCAAGCGCTGGTGTTCTCGAATCTTCATACAGCTCAGCATCTGGCAGATATCCTCTCCTCTAAAGGTTTGCCTGCAGTCTGCATCTCAGGTGGTTTAAGTCAGGATCAGAGGTTAGAGGCGATGTGGAAGCTGAAGCAGTATCAGTGTCGAGTTTTAATATCCACTGATTTGACGTCACGTGGAATTGATGCTGAGAAGGTGAACTTGGTGATTAATCTGGACGTTCCTCAGGACTGGGAGACCTACATGCACCGTATTGGTCGTGCTGGACGTTTTGGTACTCTGGGGGTTGCCGTGACCTACTGTTGCCATGGGGAGGAGGAGAACAAGATGATGGCCATCGCTCAGAAGTGCTCTCTGGATCTCATGCATTTACCAGATCCAATACCTCCAGGCATCATGGAAGAAGCGTGTGACCATGATGTGATCATAGAAACTCTTTCAAAACCAAAGATTCCTGACAATTTCAAAccagagaagaagaaaaaggCTAAATCAGAACAGATGAAGTCTAAACCCTCTAGAGAGTCTCACATCTCTGTGGTCATCACAGAAAGCGTGACCGGTGACAAATCATGCAGTCGAGCTGAAACCAAGACTAAAAATCATTCTTCCAAACCTGGGAGGCAAAAACAAATGGCGCCTGCTGCAAACCTCCAACATGACTCGACTATTACTCAGAAACAGCAGAATGACACCCTTCCCAAAATTCCTCCTTTGTCATCCTTTAAGTCGCACACAGGGAAGAGAATAACCTTCGACGATGCTTTGGTGGATTATGAGACCTTTATAAGAGAAGGTCCGGGAAGATCTGTTGAAATCATTCACCAGTATGATGGTTTCTACAGGAGTCAAGATAAAGTTAATGGTCTTCATGACGCCCATGATGAAGATGAGGCTTCTGAATCATACGTTCTAGAAGAATCACAGTCCCATCAAGATCTTCCACCAGCGCAGGAGGTTTCAGAGTTGTCCTCAGAGCAGAAGACATCTAGTGAATCCTCTTCTGAGTCTGAGATGGAAGTGGAGAGTGAATCAAGCTCTTCTGTGCCTAGCAAGTCTACACTTGAAGCACTTCCAGATAATAAAGTTTCGCTTGTACGTAATCATTCAGAATTAGCTGAATTAGCTTTACCTTCAACCAGAGTACCACAACAGGCCACCAGAAGCAAGAAAAGGCCATGTCAGCCTCAATCCCAGGACACCGCTCACCATCACAATCTTCCTCATAAACACCGAACAGCCTCCAAATCTAGCCGGAGGCCAACAGGACCAAAGCGGAGAACAAGAGAGACTGATGAGACTGAGGAGGAAGAGGCTGGACAGGATTATTGGAGCTCGTACAGGGCCTGGGCTGAATATTACAATTCATATTATCACCATTCGCCCTATAATTGGATGACTGCGTTTTATATGAATTCTGTGTACATAAAGGAAATGATGAAGCACTAGAAAAGTCAATCTTTGTAATGTtcctaaatgtattttatacatattcCTGTAGCTCCCCAATAAAGATGAGTTCCTAACA
>TCONS_00071329
TGAAGAAGTGCCACATTGCTATTGGGTCACCAGGTATGACCTAGTTGTTACAATATGATCTAGTCGAATATGTTGGTCAGAATACAATTATATCTTTAGAATTCTCACTTTTTAAACGTCGTTGATCatattaagacttGGCGAGATTCcatctaatgccgagttcagactgcatgactttcaaagtaatcgtgtcacagatgttttcacactacatgactatctgggctagtgtgttgctgctttgtttacactgcaagatgaatCGGCGACAGAGGGTTTCACactgactttacaataggaacaATCactgacaactttgtccaaactatgtCTAACAACCAAAAACACGCAgtgtatcttttgttattaactacatatcaagaaagaagcctttaatggggtagaaaatgtacatatttgctcaacTGGGTTTGAAGGGAAGTAGCAAGTTCTCCTTGACTTTTATTCTTTTTCGACTCGGTTGTGAGATTGCTCAGATGACATTTCAAACAGACAGGGTGCcgctgccaaatttacactagtttttcctccatttctccaaataaactgaaaataagctttttttcccgctggcctgcaggtacctaTGATAATCAAGACTtttagaaaaagcaaaaaaaaaaaa
>TCONS_00071330
GTCAACAACTCACCGCAAACAAAACAGATAAGTGAAGAAGAACCGAGCCGGTGAAACGCGCACTAATTTGTTCATAACGCGAAGATACAATAATTACATACACGTACATATCAAAGAATACTGTTAACACAGAACCACACCTGTGCTGTGAAAGACGTGGCTCGATATTCCAGGCAGCGGTTCTGTATGTGTGCGCAGGAGGGCGCAGTGATTCACAGCTCATGTCATTTATTCACCGTAGAAGAAACAGAACGTTGTCGCGATAGAAACATGGCGGCATCTGTGAAAGCAGCGCATGAGCTGCAATCGAGAACCCGGACGGATGATGTTTTGATTAGCGGCGGTGTCGAGTTCAGCTCTTTACTCCTCTCAAAACCCGTGCTTGAGGGTTTATCTGCTTCCGGTTTTCAGAGACCCTCTCCCATCCAGCTAAAGGCAATCCCGCTGGGAAGATGTGGACTCGATCTAATTGTTCAAGCCAAATCTGGCACAGGAAAGACCTGT

Function

symbol description
ddx20 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol. Predicted to be part of SMN complex. Orthologous to human DDX20 (DEAD-box helicase 20).

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:0000387 spliceosomal snRNP assembly biological_process
GO:0008380 RNA splicing biological_process
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component
GO:0032797 SMN complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003724 RNA helicase activity molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
ko03041 Spliceosome

ZFIN:

id description
ZDB-GENE-030131-202 Predicted to enable RNA binding activity and RNA helicase activity. Predicted to be involved in spliceosomal snRNP assembly. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in cytosol. Predicted to be part of SMN complex. Orthologous to human DDX20 (DEAD-box helicase 20).

Ensembl:

ensembl_id ENSDARG00000061204

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00071326 False 4641 mRNA 0.41 11 28241100 28256888
TCONS_00071328 False 2846 mRNA 0.45 12 28243226 28259766
TCONS_00071327 False 2843 mRNA 0.45 12 28243226 28259766
TCONS_00071329 False 649 processed_transcript 0.38 2 28253838 28255641
TCONS_00071330 True 504 mRNA 0.48 3 28256278 28259779

Neighbor

gene id symbol gene type direction distance location
XLOC_036503 NA coding downstream 12744 28169137 ~ 28228356 (-)
XLOC_036502 cttnbp2nlb coding downstream 382635 27823012 ~ 27858465 (-)
XLOC_036501 BX664731.1 coding downstream 513014 27727970 ~ 27728086 (-)
XLOC_036500 mov10b.1 coding downstream 554005 27659244 ~ 27687095 (-)
XLOC_036499 mov10b.2 coding downstream 584335 27630692 ~ 27656765 (-)
XLOC_036505 rap1aa coding upstream 7767 28267546 ~ 28274552 (-)
XLOC_036506 BX664742.1 coding upstream 34697 28294476 ~ 28295796 (-)
XLOC_036507 lmod1a coding upstream 37287 28297066 ~ 28304534 (-)
XLOC_036508 kdm5bb coding upstream 45434 28305213 ~ 28342487 (-)
XLOC_036509 tuba8l coding upstream 85573 28345352 ~ 28349859 (-)
XLOC_036498 AL954868.1 non-coding downstream 634147 27596435 ~ 27606953 (-)
XLOC_036497 NA non-coding downstream 667017 27551224 ~ 27574083 (-)
XLOC_036495 CR376741.1 non-coding downstream 1034166 27203326 ~ 27206934 (-)
XLOC_036513 NA non-coding upstream 202725 28462504 ~ 28465453 (-)
XLOC_036514 NA non-coding upstream 268550 28528329 ~ 28546676 (-)
XLOC_036516 NA non-coding upstream 467095 28726874 ~ 28728007 (-)
XLOC_036517 AL807792.1 non-coding upstream 1321716 29581495 ~ 29635923 (-)

Expression


Co-expression Network