RNA id: XM_039791311.1


Basic Information

Item Value
RNA id XM_039791311.1
length 5105
RNA type mRNA
GC content 0.50
exon number 13
gene id lemd3
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25621443 ~ 25640090 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCTCCGGAGAGTTTTGTCCAAGATGGCGTCAACGCAGTTAACGGATGAGGAGCTTTTCTCCGAATTAAAGCGCTTTGGTTTCACTCCAGGCCCGGTTACCGAAAACACTCGCCCGGTTTATTTGAAAAAACTGAAGAAGCTTCGGGAGGAGCAACAGCAGCGGGGCTCTAGGGCGGGTAAAACCCGTAGCGGTGGGGCCATCCACAGCACCGCTGGCGGAGGCAACACGGCGGGATCCAGGCCAGCCAGCCATGACGTCACGCACCTGAGCTCCAGCAGGAGACCGGGCAGGAAGCCCTCCGTCCTCGGCTTCAGCTCCGACGAGTCTGACGCTGAAACTCCGCTGAAAAGAAAAGGCCTCAATCACAGCGGTAGGGCAGACCGAAGTTCCAGTTTCCCGCAACAGCTGAAGATAAGGCCCGTTACGACGCAGACTGCAGCTACCAAGACTCAGTATGGCGCTACGAGTACGGTAAATAGCAACAATTCTTCCCCGGGTCCGGGCGGGCAGAGAAGTGTCTCGCTGGGCTGGGGAGTCCGTGCCAGATCCAGCCCTGAGGCTGAAGGGAGGGATTGCGACGACTCTGGGGACGACGACGATTATGAGGGGGGAACGGAGAAGAACTCTCGCTCTTTAAATGGCTGTGGGGCGTCTCACTTGAACGCTAGCAAGCTAGCTGGGGATTACTCCGACTCCGATGAGGAGGAGGTTGGGGGCCTTGGTGCCGGAGACAAACCGCGGGATAGGTTGGAGCCTAGACGGAGCCACCCTAAAGCGGAGTTTCCTTCCCACGTAGTGGGCCGAGGGTCTCAGACGGGAGGGGCAGCCAGACAGGTCAACCCGCCGGAGAGTCTAAATATGGTGGGGGGCCGGAGGCAGGAGGGGGAGGAAGACGAGGTGAAGAGAAGGGACTCGGACCCATCGGGAATCTTTCGGAGCCACAACTTTCCCAGGAAGTCCATCTACGTGTCCCTCGCCGAGAACCACGGAGGAGAGGCCGGGAAAAATAACCACGTCGACGGCGAGGACGGAGCccccagaagcagcagcagcagcactagtAGGTTTGCCATTGGGTTGAGACCGCGCTTCTCCAACTATAGCAGCCTGTCCCAGACCTACAGGGGCAACCACTCCAATCACACCGCCCCCAGTCCCAACCACTCGTATAGCCAGGCAGTGCTGAAGCAGAAGCTGTCCGTTCCGGAGGATGAGCTGCTCCAGCAGTTTAAAAGGGAGGAGGTGGCCTCCTCTGGTAGCTTCAGCGCTCACTACCTGTCCATGTTCCTGCTCACGGCAGCCTGCCTCTTCTTTCTGCTGCTGGGCCTCATGTACCTCAGGATGAGGGGCACTGGATCTTCGGAGGTGGATGGAGTCATTAAGAACCATCCTTTTGGCAGCGATTTTGACTCTTCTTATGAAAAGGCGGAGAAGGACCTGATCCTAAAGCTGCTGCTGAATCTACATGACCACCTGGCCCACGTCGCTGGCCAGCATGACTGTGGCGACCAGCAGCATCCCAACAGAAGTCTGTCCATGGATGAGGCCTCGGCGTACTTACTGGCTCAGAATAAGGAGTTTAAAGGCTTCATTCTTACTTCTCTGGAGTGGATCATCCGGACAGGCCAGGATGTCGGGATAAGGCTGACTGGTCAGGTAGCTGATGATCCATTGACCGACGTGTCTGAGATCTCTCAGCTGGAGTCCACGCATCCCAAGATGCCCTTCGTGTGCCGCTTCCGCCGAGCCTTCCTCACCGTCATCAGCAGAGTCTTCCTGATTGCAGCCGTGGTCGGCTGTGTGTGGAGTGGGGTCTGCTACATGAAGTATCgctggaggagagaggaggaggagaccagGCAGATGTATGACATGGTGGAGAGGATCATCGATGTGTTGAGGAGCCACAGTGAGGCTTGCCAAGAGAACCAGGACTTGCAGCCATACCTGCCCATCCCCCATGTCAGAGACTCTCTGGTTCAGCCTCAGGACCGGAAGAAAATGAAGAAGATTTGGGAGCGGGCTGAAAGGTTCCTCTCAGCCAACGAGTCCAGGATTCGAAAAGAGACCCAGAGGATCGGTGGAGCAGACTTTCTGGTCTGGAGGTGGATTCAGCCTTCTCTCAGTTGTGACAAGACCTCCTTGATGCCCTCCAAAGTCTGGCAGGGAAAAGCTTTCCCGCTGGACCGCAGGAACTCGCCTCCCAACAGCCTGACGCCATGTCTGAAGATCAGAAACATGTTTGACCCAGTCATGGAGGTTGGGGAGAACTGGGATCTAGCCATCCACGAGGCCATCCTGGAGAAGTGCAACGACAACGACGGCATCGTCCACATCGCCGTCGACAAGAACTCGCGAGAGGGCTGCGTCTATGTCAAGTGTCTGTCTGCAGAGCACTCAGGGAGAGCCTTCAAGGCACTTCATGGCTCCTGGTTTGATGGTAAGCTGGTGACGGTGAAGTATCTGCGTTTGGACCGCTACCACCAGCGCTTCCCGCAGGCCCAGGCCTGCAGCACCCCTCTGAAGGCCTCCGGGAGCACCACGAGCGCCACAAACACTACGCCCCGCCTGCAGCACCGAGGCGCCGCCAACTCGTCGGGCTTCTCGTGAGACGAGCGCCGGCGTTCTAGATTTAGCGTTGTTCTCTGTGCCCCTCCCAGCATGGCCGCgccagtctgctgctgctccttcACTGCTTCACAACGGGGAAGACTTGAGTCTGGGTCAAAGGGAGAGAGCtgggttttcttttcttttttttgtttgttttctttttttcaacggAGGATCGCAAGAGAAGTTGTTGAGCGGCGCGGCGTTTGTTTTCAATAATCTTTTGTATTAAAATGTCATGGATTTGAACAAGGAAGCGGAGCTCTTCTGGAATATTTAAGATGTGTGCAGAGACTtcatcctccctcctcttccgcAGTCTCACGCCATGGATGGAGTTGATTTGGGCACCGTATGGAAATGGCTGCATGTATCAGAGTATGCCTCGATGTAAGCTCTCAATGCGACACAGTGTGGGTGTTGATTTCCCGGAAATTTCGATGTACTccctgttattgttgttattattgttattattattattattctgatGATTATTATTTAGTCAAGTGAGGAAGGCATGAACAGACTTGTAGAGGGCGTGCTGTAAATACATGTGAATGGTGGCACAAGCTTTATTACATCCTCCGTATTAAAAGCAAACCGTAAGctcacattttattattttcctcGCTGCTCACGTACCACAGACTCCAGCTGTATCCCAGGCTCCACGAGGGGTCGCGACAGCACCGCTAACGCAGAACAGGGTAACATTTTTGGTTCTAGCATCCAGCAAGCGCTCCCACACTCTCGGCACTCTCGGCTTCGGAGCGTTATATAACGAGAATCGGGGAGCGTACCTTTTTAACAGTCCCCCTGAAAGCTTTCCCCTCCAGATTGTAATCCAATATATTCCCAAATTATTCTTCTTATTATTTCACGTTATGTTTCATTATTCGCCTCCTTTTCAAGTCGGGTCGTTTTCACTGTGGGCGCAGCGTCCCCTCGTATTTCCAAACCTGTGCTGAACAAGCGCAGCGGGTGTGGGGTCACCTCTCTGTGCACAAAGGCCAACCAGAccagaggaacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacagagggttcAGGGTGGCTTGTGGTCCAGTTTACAGTCGGCTCGTCTTCCTTTTGGAGAGGCTGATGTTCCCGCTCGTGATCCACCCTGATGCTGTCACTACTGCTCTGTCAACATATCAGCGTCCTGGGATTATGCTACCACTCTTTTTGTCACAAGGAGTACTGTgagaatgttgttgtttttttaacactcAAACCCAAATATTCCCACCCCCTTGTTAAGAAGACTCTACTGAATTTAGGGATTCCTGATAGCCTGTGTTTTTAACAGCACCCTGTGTATTCCAAAAAAACCTGCTAGAAATCCAGGAGTTGCCAGacctaatttcagtatttttttatttaattttttttatgcagTGAATTAAAAGTTGGATTCCGTATTTGCAGTGTGAAATTGTACAAATGATGCacatttcaaatgttcaaaACCTGCTGCAACAGTTCGCGGCAGGCAACCCAACTGTGCCTTAAATttgtgctttatttttttttcttaagacTGGCACTGCATTACTTGAGAATGTTCTGGatttaagaaatgttttaactgTTAAGGGGAGGAACAAGGCCTGCCATAGATGTAGTtttggtagagtttgacatcTTTCAGATTTGGTATTTTGTAGCAGTTTCCTTTGATATTAAACCAAATGCTTctctatttattattattattttaaaaaacaaatcagcTGTGGTGATGTACTATTTTAATGTCACTAAACCTGTTACATATGTgtcataacttttttttttttttttttttccctgggGGATCGACCTTACATCCGCTTCCAGACAATTGTCAGGATgtgtaaaatgacaaaataaagtgaacacttttctgaaataAGCCAGTCGATAGTGCGTCACTGTAATCTATTTTTGTACGTCTCCAGCAGAATGGTCTCAGCCCACAACTGACTGGAATGAGGAGGAATGGAAATGTTGGTGCGATTGCGATGGCACTTCTCCAGCCTTGtgcttcacctttttttttttcttcctatgaTGTATTTTATGTAAACACTGTACATTGATATAACTGTCTATTACATGCAGCTTTATTTCTATTGCGTTGGCTGTTTGGAGTGACCAGTATCCCTAACCTTCTAGCCAGAGGGATAGGTGTACAATATACTACAGACATTTAAGAAGATCCAGACGTTTTAATGTAATTTGTCAATTGTACAAAAAAACCCAGCTCAAATTAAAGGTTTATTAGGAGTTTTTAAAATGGTTCTTGTTGTGCTGTTGTGTAATGTACACACACGGGGCAGAAACATTGTAGAAACGGCCTTCTGCCGTCTTCTGGGTTCGTAGCGGTTATTCGTCTGTCGAGGCTGTTTTAGGTTTTTAATTAAAATCCCAATTTTAATTCTCAA

Function

GO: NA

KEGG:

id description
K19410 LEMD3; inner nuclear membrane protein Man1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312510 lncRNA upstream 2184 25618202 ~ 25619259 (+) True G230404
TU312507 lncRNA upstream 4772 25595592 ~ 25616671 (+) True G230401
TU312504 lncRNA upstream 14593 25595592 ~ 25606850 (+) False G230401
TU312505 lncRNA upstream 19829 25595592 ~ 25601614 (+) False G230401
TU312423 lncRNA upstream 117007 25503664 ~ 25504436 (+) True G230339
TU312512 lncRNA downstream 1831 25641921 ~ 25662819 (+) False msrb3
TU312516 lncRNA downstream 10568 25650658 ~ 25952405 (+) True G230406
TU312529 lncRNA downstream 81563 25721653 ~ 25722486 (+) True G230415
TU312540 lncRNA downstream 136921 25777011 ~ 25777634 (+) True G230417
TU312543 lncRNA downstream 148516 25788606 ~ 25789256 (+) True G230418
XM_039791198.1 mRNA upstream 6998 25608506 ~ 25614445 (+) True tmbim4
XM_039791989.1 mRNA upstream 47421 25568539 ~ 25574022 (+) True cdnf
XM_039791084.1 mRNA upstream 68442 25546940 ~ 25553001 (+) True prl2
XM_039792048.1 mRNA upstream 129712 25402417 ~ 25491731 (+) False LOC120553524
XM_039791320.1 mRNA downstream 1750 25641840 ~ 25662736 (+) False msrb3
XM_039791318.1 mRNA downstream 1751 25641841 ~ 25662736 (+) True msrb3
XM_039791314.1 mRNA downstream 1757 25641847 ~ 25662736 (+) False msrb3
XM_039791316.1 mRNA downstream 1968 25642058 ~ 25662736 (+) False msrb3
XM_039791315.1 mRNA downstream 9347 25649437 ~ 25662736 (+) False msrb3
TU312157 other upstream 843185 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1308505 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1734019 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1772819 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 398197 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 732646 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 732646 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1428987 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 1962915 27603005 ~ 27603702 (+) True G230842

Expression Profile