RNA id: XM_039791084.1


Basic Information

Item Value
RNA id XM_039791084.1
length 1018
RNA type mRNA
GC content 0.49
exon number 5
gene id prl2
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25546940 ~ 25553001 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGGTCAGTAAGGGACCCTCATATGAGGCTTCAGGGATCTTTGAATAGAAAAGCTTCTGCACCATCTGTTCGGAGACAAGAGCTCCTCCGTGCTCTGCAGGATGCCTCGAAACATCAGATCAGTGTCTTTTGAGgtgttggtctgtctgttgtTCTGCAGCAGACTGACCAGCGTGGGTGCATCACCTATCTGTACCAATGCCCACGCTGGGTGCCACGTCCTCTCCCTGTCTAACCTGTTTGACCGGGTCATCCAGCACTCAGCCAGGATGCACGGTATTTCAAATGACCTTCACTCCGAGTTTGAGCAGTATTTCCTGCCCAGTAGGAATCAAATTGGCCGGGTCAGTCGCAACTGTCATacctccaccatcctcaccccAAATGGCAAGGAGAACGCTCAGAGAATGGCGAGAGAAGAGCTGACGGAGGTGATTCTGAAGCTCTTGGTGGCATGGAGGGATCCTCTGTGGCATTTCCATCATAGCATGGCTCACTATGATGACTTCAACAACTTCAGCTCCAATAAAGCTCTTGAGATGAGCGACATGGTGCACGAGCTACGCAAAGGTGTAGAGAAAGTGGCTGAGAAGatGCAGGTGTCGGGGGTAACAAGTAACACCGTCAACAGCCTGACTTCTCCCAAGGCTTTGCTGCCATCTGAAAGTACAGAGTGGCGCCTGATGAAAGACTACGACCTCCTCTACTGCTTCCGCCGAGACTCCAACAAGGTTCAAAACTACCTGAAAATCCTCAAATGTCGCATTGTGCCAGACCACGGATGCTGAAGGCCAGAAACTTCTCGGAAATATCAACACGTTGGAATGGAAATGCTTCGGTTAGAGACTCCGCGGATAACGCACGCATGTTCACTTCTATCACGACTGGAGTTCTGCTGTGAGTGTGGACATTGTGACTTTACTACAGACAGGATGGAATGAGTGCAATGCATGTTATGATGCTGTATGccatgtttaaataaaataccatataaaacatttcaaaaaacaTCGATggaa

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005179 hormone activity molecular_function

KEGG:

id description
K05439 PRL; prolactin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312423 lncRNA upstream 42504 25503664 ~ 25504436 (+) True G230339
TU312421 lncRNA upstream 46731 25499847 ~ 25500209 (+) True G230337
TU312420 lncRNA upstream 51541 25495148 ~ 25495399 (+) True G230336
TU312410 lncRNA upstream 52585 25491783 ~ 25494355 (+) True G230327
TU312409 lncRNA upstream 52743 25436151 ~ 25494197 (+) False G230327
TU312504 lncRNA downstream 42591 25595592 ~ 25606850 (+) False G230401
TU312505 lncRNA downstream 42591 25595592 ~ 25601614 (+) False G230401
TU312507 lncRNA downstream 42591 25595592 ~ 25616671 (+) True G230401
TU312510 lncRNA downstream 65201 25618202 ~ 25619259 (+) True G230404
TU312512 lncRNA downstream 88920 25641921 ~ 25662819 (+) False msrb3
XM_039792044.1 mRNA upstream 55208 25402355 ~ 25491732 (+) False LOC120553524
XM_039792041.1 mRNA upstream 55208 25402356 ~ 25491732 (+) True LOC120553524
XM_039792042.1 mRNA upstream 55208 25402356 ~ 25491732 (+) False LOC120553524
XM_039792043.1 mRNA upstream 55209 25402359 ~ 25491731 (+) False LOC120553524
XM_039792045.1 mRNA upstream 55209 25402409 ~ 25491731 (+) False LOC120553524
XM_039791989.1 mRNA downstream 15538 25568539 ~ 25574022 (+) True cdnf
XM_039791198.1 mRNA downstream 55505 25608506 ~ 25614445 (+) True tmbim4
XM_039791311.1 mRNA downstream 68442 25621443 ~ 25640090 (+) True lemd3
XM_039791312.1 mRNA downstream 68442 25621443 ~ 25640090 (+) False lemd3
XM_039791313.1 mRNA downstream 68442 25621443 ~ 25640090 (+) False lemd3
TU312157 other upstream 768682 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1234002 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1659516 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1698316 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 485286 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 819735 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 819735 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1516076 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2050004 27603005 ~ 27603702 (+) True G230842

Expression Profile