RNA id: XM_039791989.1


Basic Information

Item Value
RNA id XM_039791989.1
length 1152
RNA type mRNA
GC content 0.48
exon number 4
gene id cdnf
representative True

Chromosome Information

Item Value
chromosome id NC_053134.1
NCBI id CM020931.1
chromosome length 29109922
location 25568539 ~ 25574022 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctattgaagggcgggtcttggcgtggccatagtaggattggTAAATACATACGCGGCTGGGACACCATGTAGCTAATAATAACGCCAAACGCTGTCATGTCGGTGTTGTCCCTCGCCATTCTGCTGCTGGTCAGAGGGTTTACCTTTTCTGCGGCAGGCAACTGTGAAGtgtgtgtggacTTTCTCTACAGATTGTATGGCAGTCTGACGTCAGCCCACAGTGAGCTCACTTCTTCCCTGGTGGAGGAAGAGCTGATCCAGGCCTGCGCTGTCGCCCAGGGGAAGGAAGCGAGGCTGTGTTACTACCTGGGAGCCAGTAGTGACGCAGCGACCCGCGTCACAGCATCAGTGTCTCGACCCCTGGCCTCCCATGTCCCCGTTGAGAAGATCTGCCAGCGCCTCAGCAGCAGAGACACGCAGATCTGTCAGCTCAGATATGAGCCTCAGCCGAAGGATCTGAGCAGCGACGGGCTGAAAAAGCTGAGAGTCTTGGAGCTGAGGAACATTCTAGCCTCGTGGGGTGAAGAGTGTCGAGGCTGTCTGGAGAAACACGAGTTTGTCAGCCTCATCCAGGAGAAAGCACCGCTGCATGCTCACAGTACGGAACTTTGAACTAGTAACTTCTGCCCCTTCTCATCCCCACTGCAAAAAAGTCAATTTTCTCTCACTCCATTTTCAAGAATATGCACACTGCAATCACTACACTGCACTGTTCCATACCGCCACTCACAAGAAACATCGGTTTGTTCGCTGGTACAAGTGTTTTCCAAGCTGAAGGTAGTTGTACGTCCTGGGGAAAACATTTTTCTCCAAATTGGCAGTAGAGTTCTGAAATGTAGTTTACATCCAGCTGCTACCATTTCCTTTGAGCCACATTATGCAGCCTGACAGACGACATGGTGGGAAAAATAATCATTTGAATGCATGATTTACTAACTCATGCTCCCACGTGACTTAACTTGTATCTATTTGTGCTAATGTGTACCTGACTGATAGCAGCCACACCGATAGCAGCATTAATGCTTTTGTCTATAGAATGTCATCAAATAGTCAAAATGaccattaaaggtgcagtagataagacttctaaaactaactttctgtcatattagctgaaactgaccctatgttccagtagaactacatgaagc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU312423 lncRNA upstream 64103 25503664 ~ 25504436 (+) True G230339
TU312421 lncRNA upstream 68330 25499847 ~ 25500209 (+) True G230337
TU312420 lncRNA upstream 73140 25495148 ~ 25495399 (+) True G230336
TU312410 lncRNA upstream 74184 25491783 ~ 25494355 (+) True G230327
TU312407 lncRNA upstream 74342 25475799 ~ 25494197 (+) False G230327
TU312504 lncRNA downstream 21570 25595592 ~ 25606850 (+) False G230401
TU312505 lncRNA downstream 21570 25595592 ~ 25601614 (+) False G230401
TU312507 lncRNA downstream 21570 25595592 ~ 25616671 (+) True G230401
TU312510 lncRNA downstream 44180 25618202 ~ 25619259 (+) True G230404
TU312512 lncRNA downstream 67899 25641921 ~ 25662819 (+) False msrb3
XM_039791084.1 mRNA upstream 15538 25546940 ~ 25553001 (+) True prl2
XM_039792044.1 mRNA upstream 76807 25402355 ~ 25491732 (+) False LOC120553524
XM_039792041.1 mRNA upstream 76807 25402356 ~ 25491732 (+) True LOC120553524
XM_039792042.1 mRNA upstream 76807 25402356 ~ 25491732 (+) False LOC120553524
XM_039792043.1 mRNA upstream 76808 25402359 ~ 25491731 (+) False LOC120553524
XM_039791198.1 mRNA downstream 34484 25608506 ~ 25614445 (+) True tmbim4
XM_039791311.1 mRNA downstream 47421 25621443 ~ 25640090 (+) True lemd3
XM_039791312.1 mRNA downstream 47421 25621443 ~ 25640090 (+) False lemd3
XM_039791313.1 mRNA downstream 47421 25621443 ~ 25640090 (+) False lemd3
XM_039791320.1 mRNA downstream 67818 25641840 ~ 25662736 (+) False msrb3
TU312157 other upstream 790281 24620812 ~ 24778258 (+) True G230148
TU312075 other upstream 1255601 24309936 ~ 24312938 (+) False LOC120553083
unassigned_transcript_1527 other upstream 1681115 23887337 ~ 23887424 (+) True trnay-gua_62
TU311875 other upstream 1719915 23833031 ~ 23848624 (+) False adm2a
TU312620 other downstream 464265 26038287 ~ 26046681 (+) False arhgef39
TU312731 other downstream 798714 26372736 ~ 26381109 (+) True mrps33
TU312732 other downstream 798714 26372736 ~ 26381109 (+) False mrps33
XR_005638128.1 other downstream 1495055 27069077 ~ 27072552 (+) False LOC120553194
TU313012 other downstream 2028983 27603005 ~ 27603702 (+) True G230842

Expression Profile