RNA id: TCONS_00075135


Basic Information

Item Value
RNA id TCONS_00075135
length 2070
lncRNA type inter_gene
GC content 0.39
exon number 4
gene id XLOC_037198
representative False

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 28721987 ~ 28819753 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCGTTTGAGTGGCTACAACGTTTCCTAGTAAAATGACAACAATGCTGAACATGTTTCTTCAtggtgggactcttattttgaaaaccgGACACAGCTCGTCGAAGAATGCTTGGAAAAGGTGGATGTCTGTTTGTTCAGCGGCATCCTGAGGATGCATAAGAGTACATACTGCTGTGTGAGTGACTGATGTGAGCCACATGAGCCTCAGAGCAGAATATTCATGACCCTTCTAAATAAGaatCAGCTCCACCAATTTGAGGATTGCAAGAACTGAAGTATGCAAGCTATATGTAGAAATCACATCATTTTACTGTACCTCTACCCAGACCATCAGTACACCCAGGAATCTGCTGATACTGGGTGGAATCCATGCAACCTTCAACTCTGACAAGGTTTCCGGTACCTGTGCCTgccacacatccccacagcatgatagACCCTCCTTCATATTTGATTTTTGAAAAGTGTACCATGGACAGTGACATTATCAGCAGCAAGATGTTCTTGGAGCTCTTTGGAGGTGGTCTGTGGTTTGTCTGTGATTATTCTAACCGTTCTTCACTTTTGCTTTTAGATAATTGTCTTGGTCTAGCACATCTTTCCTTCACAAGATCTGTTCCGGTGGCCTTCCATTTTCCTACTGTATTTCTGACTGTGGAGATAGAGACTTGAAACCTTTCTGATAGCTTTTTGCATCCTTCTAATTCATGTTGGTGATTTTCCTAGTTTTTAGGTGATTAGGAAGTTCTTTTGAGGTTCCCATGTTGCTACTTTCAGGTTCACAATAAAGAGAAGCACAACAAGCAATCAGCTATCTTAAATATCTTTTTTCAGGATTGGCTGCACCTCTGTAAGGATTGTGaagttatatatataaatcaattttTTTGTTGTAATCAATCAGCAGTAAACGACTACAGGTTTTGAAACGCACAAAAGAGAAGGTACCCAAGCTTTAGCATAAACTATTTtttagctttaatttaattttacacattttaatactGCTACACTATGGATTTCTGTCTGAAAAACAAGATCATCTAACTTTCTCTACAAACCGAACGGCATTTCGCTGCAATCTTCTCTTATAAAGAAAGTATGCAGCCACAGAGGGGTGCTCAAACCTTTGCATAAAACTGTAGTCAATAATATATAAGAAAATATAACAATGACATTGTCAACCTTTTTcaggtttaaaatattttgttctttttacaTCGCCAGGGTGCTTGACAGGAGCAACCAGAGATGTCTGACATTGTATGACATTCAGAGACAACAAAGAGATCtataaattatgaataatttaGTGAGAAATTTGTAGTCTTGTAATCTAGATTGCATGCAATCAAATATTACCCAGCGCTGCTAATAAAGTAATGTGGTGTAATGTAgttcatttaaatgaatgatttgcATTTAATACATGGCAAACTGGATTAAGCCAGGAATTTTTCTTTAAgcattcaaattattcatttatggGCAATTTCAGCTCTCTTATAGACACCTCTAGAGCAAGCATTACAATGGTGTAATCACTCCCACCGCTATGACACTTGTTCTGCAGTCTACAAAGTATCCTTGACCTCCTCCATTATTTCATCAAGGAGAAGCCACACAGCCTTTCTGGACTGCACTCGTGTTTTGGCCACAAACGAGCTTCAACAGTTTTTACTCGTTATTCCTCTCCACTCCCCTTTTGTTCTATACTGAAAATGGACGTACTTGTGCAAACAGCAGATCTACAAGGTCATTACTTGTTCTCCATGACCGCATGATCCTTTATAAGAAATGTGTGTGCGGTGGGAATGACTCATTGTTAAAATCCTGGATGTATTTCTATTGTGTCTTTTCACATGCTGGTTATGTAAATATGTCACAGTCATTACACTTTCCTGCCTGTTTTCGCTAGCCTGGTTTGAGAGCACAGTCCACAGTAATATGTGGTTCCCTAGGTGTTAGTTAGGGGTTTATATGCAGTGCCATATGTGCTAATGTGATTAGTGTTACATGTGGGTCTCCACACtgatatgtttgtgtttgtgtgtgcgtgtttaatGGG

Function

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0031570 DNA integrity checkpoint biological_process
GO:0044773 mitotic DNA damage checkpoint biological_process
GO:0044774 mitotic DNA integrity checkpoint biological_process
GO:0007093 mitotic cell cycle checkpoint biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00073209 lncRNA upstream 24988 28693592 ~ 28696999 (+) True XLOC_037197
TCONS_00075134 lncRNA upstream 115276 28602139 ~ 28606711 (+) True XLOC_037194
TCONS_00075132 lncRNA upstream 131679 28588857 ~ 28590308 (+) False XLOC_037193
TCONS_00075133 lncRNA upstream 131679 28588890 ~ 28590308 (+) True XLOC_037193
TCONS_00073203 lncRNA upstream 318841 28399324 ~ 28403146 (+) True XLOC_037192
TCONS_00075138 lncRNA downstream 88074 28816215 ~ 28818361 (+) True XLOC_037199
TCONS_00075139 lncRNA downstream 304275 29032416 ~ 29033972 (+) True XLOC_037200
TCONS_00073214 lncRNA downstream 312245 29040386 ~ 29050124 (+) False XLOC_037201
TCONS_00073222 lncRNA downstream 745301 29473442 ~ 29474979 (+) True XLOC_037203
TCONS_00074910 lncRNA downstream 771966 29500107 ~ 29500865 (+) False XLOC_037205
TCONS_00073210 mRNA upstream 24988 28693592 ~ 28696999 (+) False XLOC_037197
TCONS_00073207 mRNA upstream 30015 28688574 ~ 28691972 (+) False XLOC_037196
TCONS_00073208 mRNA upstream 30017 28689754 ~ 28691970 (+) True XLOC_037196
TCONS_00073205 mRNA upstream 115273 28598607 ~ 28606714 (+) False XLOC_037194
TCONS_00073204 mRNA upstream 117536 28598577 ~ 28604451 (+) False XLOC_037194
TCONS_00073215 mRNA downstream 312284 29040425 ~ 29058515 (+) True XLOC_037201
TCONS_00073216 mRNA downstream 595022 29323163 ~ 29328009 (+) False XLOC_037202
TCONS_00073217 mRNA downstream 597653 29325794 ~ 29326637 (+) True XLOC_037202
TCONS_00073218 mRNA downstream 702291 29430432 ~ 29482414 (+) False XLOC_037203
TCONS_00073220 mRNA downstream 703622 29431763 ~ 29481697 (+) False XLOC_037203
TCONS_00073206 other upstream 89487 28632385 ~ 28632500 (+) True XLOC_037195
TCONS_00073196 other upstream 783569 27938302 ~ 27938418 (+) True XLOC_037186
TCONS_00073193 other upstream 881447 27837403 ~ 27840540 (+) False XLOC_037184
TCONS_00073194 other upstream 881447 27837786 ~ 27840540 (+) True XLOC_037184
TCONS_00073192 other upstream 883974 27837062 ~ 27838013 (+) False XLOC_037184
TCONS_00073221 other downstream 714352 29442493 ~ 29442609 (+) True XLOC_037204
TCONS_00073223 other downstream 790098 29518239 ~ 29518355 (+) True XLOC_037206
TCONS_00073225 other downstream 792601 29520742 ~ 29527021 (+) False XLOC_037207
TCONS_00073226 other downstream 792644 29520785 ~ 29527017 (+) False XLOC_037207
TCONS_00073227 other downstream 792644 29520785 ~ 29535453 (+) False XLOC_037207

Expression Profile

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