RNA id: TU47274


Basic Information

Item Value
RNA id TU47274
length 1887
RNA type TUCP
GC content 0.46
exon number 3
gene id G35364
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2583514 ~ 2588162 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gtctcctctagctgtagataggtggggtctcctctagctgtagataggtggggtctcctctagatgtagataggtggggtctcctctagatgtagataggtggggtctcctctagctgtagataggtgaggtctcctctagctgtagataggaggggtctcctctagctgtagataggtggggtctcctctagctgtagataggtgggccaactcattttttgtgcatgcattgttttagtccggtgcaacaccggcagcgccgccgctagttagcttagcgtagtgaatggaatcctatgttgccggttagcatgttgtgagtaaaagtgagccgacaaaagacaaaaaaacaacctaattacttgcactgagacaaataatgcgttggcccacctatctacagccaggggagaccgtgataagacctatttcaactaacggtggagtatccctttaagggttgacattttacctcacagatatcaccgtgaaacctactttgattacttttaattaaggcagttatttgttgtattacacgttttctgaaatgttgtgtttaaatatgcaaaaggAGGTCATTATCTTATAcaatatatgcatccttttagcatgactctttgtggagaaactcagatttacagatctgtcgattaaatcaactaatcgattagtcggtacgattgagtgttagtcgacttaGAATTTATTCAAATCGAACACAGCCCTACGAATGGACcttcttcacagcagacatgttgacttgtcatagtaggaaaagcacagctgagattgatcaccttaacgatggctcagttccatcaagtgcacaataccaggacctctcctaagtggaatgcagccatcagtaatggtttaataccaggacctctcctaagtggattacagccatcagtaatggtttaataccaggacctCTCCTAAGAGGattacagccatcagtaatggtttaataccaggacctctcctaagtggaatacagccatcagtaatggtttaataccagggcctctcctaagtggattacagccatcagtaatggtttaataccaggacctctcctaagtggattacagccatcagtaatggtttaataccaggacctctcctaagtggattacagccatcagtaatggtttaataccaggacctctcctaagtggattacagccatcagtaatgggtcTGAATACACCTTGTGctgttcctactatgacatgtcaacatgtctgctgtgaagaagGTCTATtagctccctccctccccctttctctaATAAAGCAGTGggacaaacggagacatttacAGTCTGTCACCTCTAAGTCTGGTGTGTCACCTGCAGCAGCGCTGACACAAGTCTACGTATAACCCTTCCTGACGGGCCAGGCTGCTTCCTGACAGCTCACGCCATAGTTTCTGGCTGATGGACGGTGCAGCCAAGCAGGGCCAAAAACAAGTCCAAAATAATGAgaacaacaaagaaaagaactgtctcctcctcctcctcctccacccataTGTtcgtccctctctctctctcgctctgtggCACAGATTGGGTGTTCGGTGGCGTTCTGGGAGCTTCCTCCTGCGCCCGATGCTACATGATGATTCGTGGCTCTGGGACCGACTCGCTGATGGATTTGTGCGGCAGCACGTTGGCGCCGTTCAGGTACAGCTCGTCGTTCACGATCACGTCCTCGCCCAGCACCGTCACGTTCTCCATACGCACCTGGAGACGCAGAGGTCATCATCACACCTAACTACAAGCTAGCATAGACATAGAGTACATAGACATacagcacacagacatacaggacatagacATCACACCTAACTACAAGCTAGCATAGACATAGAATAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47273 lncRNA upstream 731 2583514 ~ 2585444 (+) False G35364
TU47283 lncRNA upstream 42968 2522740 ~ 2543207 (+) True G35371
TU47284 lncRNA upstream 42968 2522740 ~ 2543207 (+) False G35371
TU47261 lncRNA upstream 77620 2508090 ~ 2508555 (+) False G35361
TU47263 lncRNA upstream 77620 2508090 ~ 2508555 (+) False G35361
TU47260 lncRNA downstream 2289 2590451 ~ 2591348 (+) True G35361
TU47291 lncRNA downstream 33713 2621875 ~ 2622740 (+) False G35374
TU47292 lncRNA downstream 33713 2621875 ~ 2622740 (+) True G35374
TU47294 lncRNA downstream 33713 2621875 ~ 2622740 (+) False G35374
TU47295 lncRNA downstream 33713 2621875 ~ 2622740 (+) False G35374
XM_039796539.1 mRNA upstream 534032 2024224 ~ 2052143 (+) True asip1
XM_039798169.1 mRNA upstream 619659 1938583 ~ 1966516 (+) True ahcy
XM_039798510.1 mRNA upstream 659529 1913110 ~ 1926646 (+) True chmp4ba
XM_039799091.1 mRNA upstream 680427 1900274 ~ 1905748 (+) True LOC120558160
XM_039799186.1 mRNA upstream 686693 1884911 ~ 1899482 (+) False LOC120558223
XM_039799118.1 mRNA downstream 52226 2640388 ~ 2734534 (+) True LOC120558182
XM_039798837.1 mRNA downstream 147697 2735859 ~ 2745280 (+) True LOC120558018
XM_039797683.1 mRNA downstream 222096 2810258 ~ 2818790 (+) True LOC120557397
XM_039797681.1 mRNA downstream 238727 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA downstream 238728 2826890 ~ 2836128 (+) False LOC120557395
TU47255 other upstream 91584 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 198201 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 534050 2024294 ~ 2052125 (+) False asip1
XR_005639076.1 other upstream 629725 1956316 ~ 1956450 (+) True LOC120558247
XR_005639077.1 other upstream 633691 1952350 ~ 1952484 (+) True LOC120558248
TU47547 other downstream 159058 2747220 ~ 2747772 (+) True G35534
TU47612 other downstream 342762 2930924 ~ 3017125 (+) True G35578
TU47673 other downstream 693570 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 693570 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 693570 3281732 ~ 3328507 (+) True G35618

Expression Profile