RNA id: XM_039797682.1


Basic Information

Item Value
RNA id XM_039797682.1
length 1492
RNA type mRNA
GC content 0.48
exon number 9
gene id LOC120557395
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2826889 ~ 2836128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGTGTCAGTACCTACTGTCATACTTACGTCCATATATTTGTTTCATATGACTGCTGCGATAACTCTTACAGTATTTTGAAATTTTCAGGGTTGCGACTAATCGAGGAGCATGGACCGTGTAGATACAAAGGAATCAGTCATGCATGTTTCGTCCCCTGAGAATTGTGACATTGACATTTTAGAGAATGGAAGGACCGTCAAAGATGTCAtagacaataaaataaaagagcTTGGTTCTATGgacaatgaAGAGCCATTCTACGTGGCAAATCTAGATAGCGTGTATAAGAGGCACCTCAGATGGCTTACTAACTTGCCTCGAGTCAAGCCTTTCTATGCAGTGAAGTGCaacaacacagcagcagttttgaGGCTGATGAGTGCTCTGGACACAGGTTTCGACTGTGCCAGCAAGGCTGAGATCCAGATGGCCTTGTCCCTCGGAGCGACACCTGATAAAATAATTTACGCACATACAACCAAACCACTGTCGCACATCAAATATGCCTGTGCTCATGGAGTAGATATGATGACTTTTGATAGTGAGGATGAACTCCTTAAAATGTCTCGTTGTCACGCCAAAGCCAAACTGGTACTCCGCATCGCAGTGGATGACTCCAAGTCGCTGCTAAAACTCAGTTCAAAGTTCGGAGCCAGACTGGTGTCAGTCGGGAAGCTGCTGGAACGTGCTGGAGAGCTGGGCTTAGACGTCATAGGGGTCAGCTTTCATGTAGGCTGCGGTTGCACTGAAGGTTCGACGTTCAAACAGGCCATTGGAGATGCCAGACATGTCTTTGACATAGCGGATTTGCTGGGAGTCCAGATGAGAGTCTTGGATATTGGTGGAGGATTTTCTGCGATTGGGGAGTTTCAAGAGAAATTTGAAGAgTTTTCAGAAGTGATTAATGGAGCACTGGATGAATTCTTCCCGCCTGACAGTGGGGTGCAGATTATTGCAGAGCCGGGCCGGTACTACGTGGAATcagccttcacactggcagcgAACGTCATTGCCAGAAGAATAGTCAGTGATGATATGGATGAACATAGCGACGGTGAGGAAAACAGCCCTGGCAGAATTATGTACTACCTTAACGATGGAGTGTTTGGCTCCCTGAGTTGCATTGTCCATGACCCTGCTCACCCCAACTATGAGCCATATCTTCACAGGGTTGTTGAGAGCAGCGAGCGGAGATACCGGTCTGTTATCTGGGGTCCAACCTGCGACAGCTTTGACAAAGTAATTGACAACTACTGGATTCCTGAGTTGCGTGTGGGGGACTGGCTTCTCCTCGACAACATGGGCGCTTACTCTGTCAGTGCAACGTCTGACTTCAATGGCTTTGAAAGAGCGCACATTTACCCTGTTGTGACCGCTGAGACCTGGCACGCCTTAAACCTTTCTCACACCTTCAACAACCCTTAattcacacccccaaccggctcgtcagacaccgcctaccaagagcctgggtctgtccgaggtttctt

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47566 lncRNA upstream 40551 2783952 ~ 2786339 (+) True G35548
TU47559 lncRNA upstream 52300 2766807 ~ 2774590 (+) False G35544
TU47557 lncRNA upstream 52832 2768526 ~ 2774058 (+) True G35544
TU47554 lncRNA upstream 67394 2759204 ~ 2759496 (+) True G35541
TU47314 lncRNA upstream 106189 2720074 ~ 2720701 (+) True G35380
TU47600 lncRNA downstream 31799 2867927 ~ 2884120 (+) True G35572
TU47608 lncRNA downstream 73069 2909197 ~ 2983784 (+) False G35576
TU47606 lncRNA downstream 73404 2909532 ~ 2983784 (+) True G35576
TU47609 lncRNA downstream 147132 2983260 ~ 2983784 (+) False G35576
TU47620 lncRNA downstream 164875 3001003 ~ 3067663 (+) True G35584
XM_039797683.1 mRNA upstream 8100 2810258 ~ 2818790 (+) True LOC120557397
XM_039798837.1 mRNA upstream 81610 2735859 ~ 2745280 (+) True LOC120558018
XM_039799118.1 mRNA upstream 92356 2640388 ~ 2734534 (+) True LOC120558182
XM_039796539.1 mRNA upstream 774747 2024224 ~ 2052143 (+) True asip1
XM_039798169.1 mRNA upstream 860374 1938583 ~ 1966516 (+) True ahcy
XM_039798727.1 mRNA downstream 27408 2863536 ~ 2882763 (+) True ccdc51
XM_039797837.1 mRNA downstream 80668 2916796 ~ 2949567 (+) True osgn1
XM_039798877.1 mRNA downstream 127999 2964127 ~ 3073270 (+) True mtss1
XM_039798535.1 mRNA downstream 617472 3453600 ~ 3589612 (+) True epha8
XM_039799099.1 mRNA downstream 923366 3759494 ~ 3766040 (+) True c4h1orf50
TU47547 other upstream 79118 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 238728 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 332299 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 438916 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 774765 2024294 ~ 2052125 (+) False asip1
TU47612 other downstream 94796 2930924 ~ 3017125 (+) True G35578
TU47673 other downstream 445604 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 445604 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 445604 3281732 ~ 3328507 (+) True G35618
unassigned_transcript_179 other downstream 446803 3282931 ~ 3283002 (+) True trnae-cuc_2

Expression Profile