RNA id: XM_039797683.1


Basic Information

Item Value
RNA id XM_039797683.1
length 1537
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC120557397
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2810258 ~ 2818790 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGATAACTATTACAGCATTTTGAAATTTTCAGGGTTGCGACTAATCGAGGAACATGGACTGTGGAACAGTAGATACAAAGGAATCAGTCATGCATGTTTCGTCCCCTGAGAATTCTGACATTGACATTTTAGAGAATGGAAGGACCGTCAAAGATGTCAtagacaataaaataaaagagcTTGGATCTATGgacaatgaAGAGCCATTCTACGTGGCAAATCTAGATAGCGTGTATAAGAGGCACCTCAGATGGCTTACTAACTTGCCTCGAGTCAAGCCTTTCTATGCAGTGAAGTGCaacaacacagcagcagttttgaGGATGATGAGTGCTCTGGACACAGGTTTCGACTGTGCCAGCAAGGGTGAGATCCAGATGGCCTTGTCCCTCGGAGCGACACCTGATAAAATCATTTACGCACATACAACCAAACCACTGTCGCACATCAAATATGCCTGTGCTCATGGAGTAGATATGATGACTTTTGATAGTGAGGATGAACTCCTTAAAGTGTCTCGTAGTCATGCCAAAGCCAAACTGGTACTCCGCATCGCAGTGGATGACTCCAAGTCGCTGATAGAACTCAGTTCAAAGTTCGGAGCCAGACTGGTGTCAGTCGGGAAGCTGCTGGAACGTGCTGGAGAGCTGGGCTTAGACGTCATAGGGGTCAGCTTTCATGTAGGCAGCGGTTGCACTGAAGGTTCGACGTTCAAACAGGCCATTGCAGATGCCAGACATGTCTTTGACATAGCGGATTTGCTGGGAGTCCAGATGAGACTCTTGGATATTGGTGGAGGATTTTCTGCGATTGGGGACTTTCAAGAGAAATTTGAAGAGTTTTCAGAAGTGATTAATGGAGCACTGGATGAATTCTTCCCGCCTGACAGTGGGGTGCAGATTATTGCAGAGCCGGGCCGGTACTACGTGGAATcagccttcacactggcagcgAACGTCATTGCCAAAAGAGTAGTCAGTGATGATATGTATGAACATAGCGACGGTGAGGAAAACAGCCCTGGCAGAATGATGTACTACCTTAACGATGGAGTGTTTGGCTCCCTGAGATGCATTGTCTTTGACCCTGCTCACTCCAACTATGAGCCATATCTTCACAGGGTTGTTGAGAGCAGCGAGCGGAGATACCGGTCTGTTATCTGGGGTCCAACCTGCAGCAGCTCTGACAAAGTAATTGACAACTACTGGATTCCTGAGTTGCGTGTGGGGGACTGGCTTCTCCTCGACAACATGGGCGCTTACTCTGTCAGTGCAACGTCTGACTTCAATGGCTTTAAAAGAGCGCACATTTACCCTGTTGTGACCGCTGAGACCTGGCACGCCTTAAACTTTTCTCAAACCTTCAACAACCGTTAATGATCTGGCAACACTTCTGTTTGACAACAGCGCAATACTCTTATGAATATTTTGTAACGTGAATTAATATCTCTGCACCTGCTAGCCACCATAGGATACTTTTCTTCCAGTTTAAAATAACATTTgtgaatttttgttttataatcaTCCACTGTAGAGTT

Function

GO:

id name namespace
GO:0042462 eye photoreceptor cell development biological_process

KEGG:

id description
K01586 lysA; diaminopimelate decarboxylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47566 lncRNA upstream 23919 2783952 ~ 2786339 (+) True G35548
TU47559 lncRNA upstream 35668 2766807 ~ 2774590 (+) False G35544
TU47557 lncRNA upstream 36200 2768526 ~ 2774058 (+) True G35544
TU47554 lncRNA upstream 50762 2759204 ~ 2759496 (+) True G35541
TU47314 lncRNA upstream 89557 2720074 ~ 2720701 (+) True G35380
TU47600 lncRNA downstream 49137 2867927 ~ 2884120 (+) True G35572
TU47608 lncRNA downstream 90407 2909197 ~ 2983784 (+) False G35576
TU47606 lncRNA downstream 90742 2909532 ~ 2983784 (+) True G35576
TU47609 lncRNA downstream 164470 2983260 ~ 2983784 (+) False G35576
TU47620 lncRNA downstream 182213 3001003 ~ 3067663 (+) True G35584
XM_039798837.1 mRNA upstream 64978 2735859 ~ 2745280 (+) True LOC120558018
XM_039799118.1 mRNA upstream 75724 2640388 ~ 2734534 (+) True LOC120558182
XM_039796539.1 mRNA upstream 758115 2024224 ~ 2052143 (+) True asip1
XM_039798169.1 mRNA upstream 843742 1938583 ~ 1966516 (+) True ahcy
XM_039798510.1 mRNA upstream 883612 1913110 ~ 1926646 (+) True chmp4ba
XM_039797681.1 mRNA downstream 8099 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA downstream 8100 2826890 ~ 2836128 (+) False LOC120557395
XM_039798727.1 mRNA downstream 44746 2863536 ~ 2882763 (+) True ccdc51
XM_039797837.1 mRNA downstream 98006 2916796 ~ 2949567 (+) True osgn1
XM_039798877.1 mRNA downstream 145337 2964127 ~ 3073270 (+) True mtss1
TU47547 other upstream 62486 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 222096 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 315667 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 422284 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 758133 2024294 ~ 2052125 (+) False asip1
TU47612 other downstream 112134 2930924 ~ 3017125 (+) True G35578
TU47673 other downstream 462942 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 462942 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 462942 3281732 ~ 3328507 (+) True G35618
unassigned_transcript_179 other downstream 464141 3282931 ~ 3283002 (+) True trnae-cuc_2

Expression Profile