RNA id: TU47674


Basic Information

Item Value
RNA id TU47674
length 905
RNA type TUCP
GC content 0.48
exon number 3
gene id G35618
representative False

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 3244231 ~ 3358820 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ctctccacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgctggctTGAAATGGGTGAAATTGGCAGTCTGGCGCGTAGCAAACACTCAGCGGTGACCCACCACTCTGCCAGGCAAGGTAACACACCTTTAACAGGGCACCAATAGAGTCTGAAACAAGCAGGGTGAACTTTGAACGGTTTtggaggtttttttttgtaactaaAACTACCAGCTGACTACCAGCTGCCCTGTTAAAAACACACGCTCCCGGTTTAAAAACCACAACGTACCAGATAGAGGGTCAAGGCCTCGGCCCTGCGCGTGTTGACTCGGCGTCGCTTTGTAAATACAGCGCTTTAGGAACTGATACTGAGAGGCTCTGAACGCAACGCTCCCAGTACTCGCAGATATCGGTGAAAGTACAatggtaaaaacaaaaaaaagaagtgtgtgGCCAGTCATGTCAGATCACAGATAAtcccagagagaaagagagagagagaaagaaaaagaaaacaaagaagaggTGAATTTCATTTGTTCACATTTAGGACGGATGCCCACTAGCACGGAGCTCTTGGAAAGGTAGAAATGACTGAGATGGGAGGGTGGGTGGGTAAGGCCGAACGTTGGGACTCCTTACATACACCCTATGATCACATGAGCACAATGTCTTGgttggagagggagggaggggaggaggggaaggGAAAGGGGGAGCAAAACAAGGAAAAGAAAGCACACCAAGTCCAAACCATTGAGCCAGGCCACCAGgagaagagacaaaatactcTAAAACACAGAGCAacgaaagaaaaaactaaatctttgagaagagacagagagagagagagagagagagagagagggagagggagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47686 lncRNA upstream 8186 3273147 ~ 3273546 (+) True G35627
TU47621 lncRNA upstream 57570 3223739 ~ 3224162 (+) True G35585
TU47626 lncRNA upstream 203328 3020476 ~ 3078404 (+) True G35589
TU47620 lncRNA upstream 214069 3001003 ~ 3067663 (+) True G35584
TU47840 lncRNA downstream 282099 3640919 ~ 3641407 (+) True G35704
TU47868 lncRNA downstream 311870 3670690 ~ 3677753 (+) True G35718
TU47887 lncRNA downstream 408556 3767376 ~ 3767576 (+) True G35736
TU47888 lncRNA downstream 409032 3767852 ~ 3768388 (+) True G35737
TU47890 lncRNA downstream 413791 3772611 ~ 3829941 (+) True G35739
XM_039798877.1 mRNA upstream 208462 2964127 ~ 3073270 (+) True mtss1
XM_039797837.1 mRNA upstream 332165 2916796 ~ 2949567 (+) True osgn1
XM_039798727.1 mRNA upstream 398969 2863536 ~ 2882763 (+) True ccdc51
XM_039797681.1 mRNA upstream 445604 2826889 ~ 2836128 (+) True LOC120557395
XM_039798535.1 mRNA downstream 94780 3453600 ~ 3589612 (+) True epha8
XM_039799099.1 mRNA downstream 400674 3759494 ~ 3766040 (+) True c4h1orf50
XM_039797012.1 mRNA downstream 448352 3807172 ~ 3830945 (+) True nuf2
XM_039799131.1 mRNA downstream 535485 3894305 ~ 3913220 (+) True cfap92
XM_039798528.1 mRNA downstream 856704 4215524 ~ 4242500 (+) True hdac11
TU47612 other upstream 264607 2930924 ~ 3017125 (+) True G35578
TU47547 other upstream 533960 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 693570 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 787141 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 893758 2385615 ~ 2387974 (+) True LOC120556786
TU47821 other downstream 94973 3453793 ~ 3556578 (+) False epha8
TU47964 other downstream 590014 3948834 ~ 3950128 (+) True G35791
TU48122 other downstream 1128715 4487535 ~ 4558029 (+) False G35921
TU48123 other downstream 1128715 4487535 ~ 4558029 (+) False G35921
TU48126 other downstream 1128715 4487535 ~ 4493441 (+) False G35921

Expression Profile