RNA id: TU47868


Basic Information

Item Value
RNA id TU47868
length 1366
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G35718
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 3670690 ~ 3677753 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TCCATTTTTATGTCTCTGTTTACTTTATTCTAAAAGAAACAGACAGGGGTATACTGTAAATGAGATGGTACACAACACTGAGGAGGTAAATATTAGAGAAAGGAATGGCATGGTAAATAAATGCAGACATCAGAGGGGCATTTGAACACTCAGCAAAACTGGCGTTCCTTAGTAGGCTACAGGagacaacacacagcacagtacATCCTTTAAAGTCAATAACACAATGACTCTGTCATTCATACAAAATCATATTGGCACTTGAAACAAAATGGTGAATGTACTGGGTATATCCTCAATCCAGGCTACTTGGAAACAGGCACACAGCTTATTACAGACAGTGGCAGAAGGCACAATGCTGAAGATCTATCGTATGTatgtctttgttgtttttacaagTGGTACTGTAGAGTAGCTTCACATTCATTTTCAGAAATCCAACAATAGAAAATAAGGCACACATAACTGCTGGCAGAGGAACTACATGTACGGACACACATCCCTCAGATGGGATGGGACACTAGAAAGAATCCATGAAGTCAAAAATATGCATGTGCACAAACACGTGTTATAAGGCACTGTAGTAAAACATTATAtatgtagtaaaaaaaaaaaaaaaaggcaaaaaaagaataaagtagGTGGTATATACACCCGGGCATTTTAACATGTTATAGAAAACATACCCTGAATGTCTCTCCCAAAGTCaacaaaacagacaagacaTGGATGTCATCTTTCTCAATCCCTCTGAAGCAACTTCTTCATAAAACCTTCGAAAAaaaccatttattttacttcaaCAGAGACTCTAATTTATGTTGCTGAAATATGCTTGAAAGGTTGCTGTTCATAAATTCTTTCTTTAatgctgtctgtttgttttgagTTCCTCAGTGAGAGAGTTTTGTCTGTTGACTGATTCTAAACCATGGTAAGGCCAGAAGACTCTCCCAATCTACAAGTACTGCTCCCTTTTCTCTGGTGGGGTACTTTTAACATTTGGTCTGCAAttcaaaagggaaaaaaaaagacacagtcAAAGTTCAGTCACAGCGCACAAAATAAACCCAAaagacacatttacaaaaacaccCAGAGGTCATAGGATAGAAGTGAAATCATAAATCAGCGCAACATAACCACAAAGGGTTTTCAACTCATTGTTAACTTTCGGCCAGTAATGGGACAGAGGAGGGTGTGGGAGGTGGAGCAGAGGGTCGACAGGCTGAAATGGAGGAGGACGCCTCATTTCTTAAATAGAAGGTCTGATCACATATCCTTTAAGAGTCCATATTTACAGAAAAGGCTCAGAAGGTATAGGGGAAAAATGGGAAAAGACAATGCATCTTGgtTGGACAGAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47840 lncRNA upstream 29283 3640919 ~ 3641407 (+) True G35704
TU47677 lncRNA upstream 342183 3244231 ~ 3328507 (+) False G35618
TU47669 lncRNA upstream 342183 3285562 ~ 3328507 (+) False G35618
TU47686 lncRNA upstream 397144 3273147 ~ 3273546 (+) True G35627
TU47621 lncRNA upstream 446528 3223739 ~ 3224162 (+) True G35585
TU47887 lncRNA downstream 89623 3767376 ~ 3767576 (+) True G35736
TU47888 lncRNA downstream 90099 3767852 ~ 3768388 (+) True G35737
TU47890 lncRNA downstream 94858 3772611 ~ 3829941 (+) True G35739
TU47892 lncRNA downstream 112251 3790004 ~ 3791973 (+) True G35741
TU48009 lncRNA downstream 690938 4368691 ~ 4369050 (+) True G35833
XM_039798535.1 mRNA upstream 81078 3453600 ~ 3589612 (+) True epha8
XM_039798877.1 mRNA upstream 597420 2964127 ~ 3073270 (+) True mtss1
XM_039797837.1 mRNA upstream 721123 2916796 ~ 2949567 (+) True osgn1
XM_039798727.1 mRNA upstream 787927 2863536 ~ 2882763 (+) True ccdc51
XM_039797682.1 mRNA upstream 834562 2826890 ~ 2836128 (+) False LOC120557395
XM_039799099.1 mRNA downstream 81741 3759494 ~ 3766040 (+) True c4h1orf50
XM_039797012.1 mRNA downstream 129419 3807172 ~ 3830945 (+) True nuf2
XM_039799131.1 mRNA downstream 216552 3894305 ~ 3913220 (+) True cfap92
XM_039798528.1 mRNA downstream 537771 4215524 ~ 4242500 (+) True hdac11
XM_039798525.1 mRNA downstream 537771 4215524 ~ 4242498 (+) False hdac11
TU47821 other upstream 114112 3453793 ~ 3556578 (+) False epha8
TU47676 other upstream 342183 3281732 ~ 3328507 (+) True G35618
TU47964 other downstream 271081 3948834 ~ 3950128 (+) True G35791
TU48122 other downstream 809782 4487535 ~ 4558029 (+) False G35921
TU48123 other downstream 809782 4487535 ~ 4558029 (+) False G35921
TU48126 other downstream 809782 4487535 ~ 4493441 (+) False G35921
TU48127 other downstream 809782 4487535 ~ 4493441 (+) False G35921

Expression Profile