RNA id: TU47964


Basic Information

Item Value
RNA id TU47964
length 1267
RNA type TUCP
GC content 0.57
exon number 2
gene id G35791
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 3948834 ~ 3950128 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ggtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgtctgcctgcctgtgtgtctgtctttctgtctgtctgtctgtctgcctacctgtgtgtgtgtctgtctgcctgcctgtgtgtctgtctgtctgcctgcctgtgtgtgtgtctgtctctgcctgtgtgtgtgtatgtctgtctgtctgtctgcctgtgtgtgtgtctgtctgtctcactgtttGCCTGTCTGTTTGCCTGGGTGTCTGCCTgtttgtctatctgtctgtcggtctgcctgcctacctgtgtgtctgtctgtctgtttgtgtgtgtctgtgtgtgtgtgtgtcggtctgtctgcctgtctgtctgtctgtcaaacCACCCTCACGCTAGATAAAATCACTTTGTAGACATTAAAGTCAAGATTACTATTGACTTCTTCTGTAAATACTAGTAAGTAAGATATTTGATCCTTTAATGTACTAAGGAGAGAAACAGTAGTTGTGGTCTTTGTGCATGCTCTGGCGTTGTTGTGTCTTGCTCTTGAAGCAAGCAGACATGAAAGGAAATGTGTTTCTATGGAATAAACTGCCCCCCTGTGAtgaacgtaaaaaaaaataaaaaaaaattgacaaggGACGCAACGGGATCTCGTCTGGCTTCCCATCCCGAGACCGACCATTGGGCAGTGCGACCGTCTCTTCAGCCGAGAGCCACGGAGTAAAATCAAAGTTCAGTCAGAGAGCTCagaaagcccccccccccacccccagtgCACGTTCAGACCACCGTACTGATGCCGCTGTGCTTGGGCTTGGTGCTGCTGGGGGCCTGGGAGGGTGCTGGCGGCGGGCCGTGGTGATGCGCGGCGTGCGCGGGGTGAGCGGAGTGCGCCGAGTGGCTCCCGTGGCCGTGCTGCGTGTGAGGGTGAGACGGGTAGGCCGGCTGCGGGCCGTGAGAAGGGGGCGGGTGGTACTGGTGCGGAGGGTGCTGCAAGTGTGCCGGCgggtggtagtggtggtggtggtggtaagGCGGAGGGTTCTGGGTCAAGTGGCAGAACTGGGGGTGGTGCATGGAGGCCGACGCGTCTGTCTCCGACCGGGCCgtgtggtgcaggttggcaggGTGGGGGGTGTGGGAGATGAGGGTGGGGTGCAGGGTCTGCGGTGTGGGGCTGGGGGACTTCACCCGCCTGGTGCCGAACAGAGATCCCAGCAGCGAAGAGGAGTTGGGCAGGGACTGGCCGCTGTGGCGGGACGGGCAGTCTCGGCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47890 lncRNA upstream 118893 3772611 ~ 3829941 (+) True G35739
TU47892 lncRNA upstream 156861 3790004 ~ 3791973 (+) True G35741
TU47888 lncRNA upstream 180446 3767852 ~ 3768388 (+) True G35737
TU47887 lncRNA upstream 181258 3767376 ~ 3767576 (+) True G35736
TU47868 lncRNA upstream 271081 3670690 ~ 3677753 (+) True G35718
TU48009 lncRNA downstream 418563 4368691 ~ 4369050 (+) True G35833
TU48010 lncRNA downstream 419791 4369919 ~ 4370221 (+) True G35834
TU48146 lncRNA downstream 655332 4605460 ~ 4610060 (+) True G35925
TU48164 lncRNA downstream 660410 4610538 ~ 4613004 (+) True G35941
TU48165 lncRNA downstream 665765 4615893 ~ 4617397 (+) True G35942
XM_039799131.1 mRNA upstream 35614 3894305 ~ 3913220 (+) True cfap92
XM_039797012.1 mRNA upstream 117889 3807172 ~ 3830945 (+) True nuf2
XM_039799099.1 mRNA upstream 182794 3759494 ~ 3766040 (+) True c4h1orf50
XM_039798535.1 mRNA upstream 359222 3453600 ~ 3589612 (+) True epha8
XM_039798877.1 mRNA upstream 875564 2964127 ~ 3073270 (+) True mtss1
XM_039798528.1 mRNA downstream 265396 4215524 ~ 4242500 (+) True hdac11
XM_039798525.1 mRNA downstream 265396 4215524 ~ 4242498 (+) False hdac11
XM_039798526.1 mRNA downstream 266077 4216205 ~ 4242499 (+) False hdac11
XM_039798527.1 mRNA downstream 266077 4216205 ~ 4242499 (+) False hdac11
XM_039797519.1 mRNA downstream 322814 4272942 ~ 4361643 (+) True fbln2
TU47821 other upstream 392256 3453793 ~ 3556578 (+) False epha8
TU47673 other upstream 590014 3281732 ~ 3358820 (+) False G35618
TU47674 other upstream 590014 3281732 ~ 3358820 (+) False G35618
TU47676 other upstream 620327 3281732 ~ 3328507 (+) True G35618
TU47670 other upstream 620327 3291804 ~ 3328507 (+) False G35618
TU48122 other downstream 537407 4487535 ~ 4558029 (+) False G35921
TU48123 other downstream 537407 4487535 ~ 4558029 (+) False G35921
TU48126 other downstream 537407 4487535 ~ 4493441 (+) False G35921
TU48127 other downstream 537407 4487535 ~ 4493441 (+) False G35921
TU48128 other downstream 537407 4487535 ~ 4497880 (+) False G35921

Expression Profile