RNA id: XM_039798727.1


Basic Information

Item Value
RNA id XM_039798727.1
length 1840
RNA type mRNA
GC content 0.55
exon number 7
gene id ccdc51
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2863536 ~ 2882763 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGAATGACCTTCAGGTGCCTGACCGAAACGACCATATTGGTTTTTATTCATTTGACAATCAAGATGCTAAACTAGTCAGCCAAAAGAAACTGCGTCCGTGTGACAAGAATGTTGTGACAACATTGAAGAAAACAGGTGCGTGTTCACACGTTGGCTCTGTAGCTGCAGTGAAATCGAAGCTCTGACGACAGTTTTTCAAGCTGCACTTCTGACCGCTGCCCTTCTCAATGAGGTACAGAGGAGCTCAGATCTGTCTCCGGGCTCATGGCTGGTGCTGTCTGTCCCGCCTCTCCCGGTCTGGATCCCTGCCCGCCAGAATCACTCTGGTCCGAACTTACAGCGCTCAGCATCAGCCCGGCTCCCCTCCGCCCATTAACCCCACCCCTCCTGATGGAAAGGGAGGAGCCGAGGTGGTGAAGGAGCGTACCCTGGCTGCCCTACAGCATGCAGGTGATACGGGGCTGCAGTGGGGTCAGAGATTTGCTGATACGGCCAACGCCTGGGTCAACTACTGGTGGGGGAGGTACGAGGAGTTCGTCGGGCTCAACGAAGTCCGCGTGGCCCAGAGCAAGGTCCATGAGGCTGAGGCTGCGTTCATGGTGGCCAGAGGGATGGTGCGCGAGGCTAATGTCAGCCTGGAGGCCCTGCAGGGAAGACTGAAGGAGGTCAGAGACCGGCTGGACAGAGTCTCCAGGGAGGAGGCCCATTACCTGGAGCTGGCCACGCTGGAGCACAAACTGCTGCAGGAGGAGCGCCGTCTCCGGACAGCGTACGAGAATGCGGAGGGTTCGGAGAGGGAGAAGTTCGCCTTGTTTTCCGCGGGCGTCCGGGAGTCCCACGAGAAAGAGAGGACGAGAGCGGAGCGCACCAAGAACTGGTCCGTCATTGGCTCGGTGCTCGGAGCCCTGATCGGCGTCATGGGATCGACATACATCAACCGCGTCCGCCTGCAGGAGCTGAAGAGTCTGCTGCTGGAGGCCCAGAAAGGCCCAGAGAGCCTGCAGGAAGCCCTCAGGGTCCAGGCTGGAAACCATCGCTACCAGCAGGACGAGCTCCAAGCGCTCATCAACAGCCTCCGGGTGGCTCTGGATGACGCCTTCACACAGAGGGACCCTGTCCCTCAGGACAAGAGAGCTCCGACCCCAGTCTCCCCCACGGTGCTTCTTTCAGCCTTAAAAGACCTCCAGATCGGCAGCCAAAAGACTGAGTCCCTTCTAGAGTCCGTCCGGCCACAACTGGGACAACTGGGACAACTGGAGCAAGGACTCGGTAGAGTTGAGGGCGAATTGTCGGTGGTGAGGCGGCTGCTGGAGACCAGACCACAGGCCGAAAAGCAGCCTGCTCAACCGCAGTTAGCAAGCCCAGTGAGTCCAacgagagcagagagagaggaccAGTGGGAGTCTGAGGCGGTGGTGAGGCGTCTGGAGGAGACCCAGAGGACGCTTGGAGAACGAATTAGGACAAACACGCTTTATAGCGCGGCGTTTACCTACACCGCCACTGCCATTACCATCTCTGCTGTCTACCTGCTGCTCAGAGGAACTGGTTAGACCTGACATCTGAATATGTTCACATACACTGTACCAATAGCAATCACTGGGAGTAATAATCTAAATGAATTATGTCAGAATACAACATTTACTTAGTTGGAAGTAACTCTAAATTCTCTAATAACCTGGTTGTAGGTGTTGAATTGGTCTTATCTTGTACTGCTGCTGTTTACTGCActactagtctcgctttgccagacatcaatttaggttcacaatacattttggcacacctagttgtgcgccaaaaccaaaaaacgtgggaaactgtttttcaacttgCAATT

Function

GO:

id name namespace
GO:0016070 RNA metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0010467 gene expression biological_process

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03008 Ribosome biogenesis in eukaryotes

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47566 lncRNA upstream 77197 2783952 ~ 2786339 (+) True G35548
TU47559 lncRNA upstream 88946 2766807 ~ 2774590 (+) False G35544
TU47557 lncRNA upstream 89478 2768526 ~ 2774058 (+) True G35544
TU47554 lncRNA upstream 104040 2759204 ~ 2759496 (+) True G35541
TU47314 lncRNA upstream 142835 2720074 ~ 2720701 (+) True G35380
TU47608 lncRNA downstream 26434 2909197 ~ 2983784 (+) False G35576
TU47606 lncRNA downstream 26769 2909532 ~ 2983784 (+) True G35576
TU47609 lncRNA downstream 100497 2983260 ~ 2983784 (+) False G35576
TU47620 lncRNA downstream 118240 3001003 ~ 3067663 (+) True G35584
TU47624 lncRNA downstream 131268 3014031 ~ 3053586 (+) True G35587
XM_039797681.1 mRNA upstream 27408 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA upstream 27408 2826890 ~ 2836128 (+) False LOC120557395
XM_039797683.1 mRNA upstream 44746 2810258 ~ 2818790 (+) True LOC120557397
XM_039798837.1 mRNA upstream 118256 2735859 ~ 2745280 (+) True LOC120558018
XM_039799118.1 mRNA upstream 129002 2640388 ~ 2734534 (+) True LOC120558182
XM_039797837.1 mRNA downstream 34033 2916796 ~ 2949567 (+) True osgn1
XM_039798877.1 mRNA downstream 81364 2964127 ~ 3073270 (+) True mtss1
XM_039798535.1 mRNA downstream 570837 3453600 ~ 3589612 (+) True epha8
XM_039799099.1 mRNA downstream 876731 3759494 ~ 3766040 (+) True c4h1orf50
XM_039797012.1 mRNA downstream 924409 3807172 ~ 3830945 (+) True nuf2
TU47547 other upstream 115764 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 275374 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 368945 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 475562 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 811411 2024294 ~ 2052125 (+) False asip1
TU47612 other downstream 48161 2930924 ~ 3017125 (+) True G35578
TU47673 other downstream 398969 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 398969 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 398969 3281732 ~ 3328507 (+) True G35618
unassigned_transcript_179 other downstream 400168 3282931 ~ 3283002 (+) True trnae-cuc_2

Expression Profile