RNA id: TU47606


Basic Information

Item Value
RNA id TU47606
length 579
lncRNA type read_through
GC content 0.54
exon number 4
gene id G35576
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 2909197 ~ 2983784 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tctcctctagctgtagataggtggggtctcctctagctgtagataggtgaggtctcctctagctgtagataggtgaggtctcctctagctggagataggtggggtctcctctagctgtagataggtggggtctcctctagctggagataggtgaggtctcctctagctgtagataggtgaggtctcctctagctgtagataggtggggtctcctctagctgtagataggtggggtctcctctagctgtagataggtgagggtctcctctagctggagataggtggggtctcctctagctggagataggtggggtctcctctagctggagataggtggggtctcctctagctgtagataggtggggtctcctctagctgtagataggtgaggtctcctctagctgtagataggtgaggtctcctctagctggagataggtggggtctcctctagctgtagataggtggggtctcctctagctgtagataggtggggtctcctttagctgtagataggtggggtctcctctagctgtctCCTCTAGCTGGAGATAGGTGGGGTTTCCCCTAGCtggagata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU47600 lncRNA upstream 25412 2867927 ~ 2884120 (+) True G35572
TU47566 lncRNA upstream 123193 2783952 ~ 2786339 (+) True G35548
TU47559 lncRNA upstream 134942 2766807 ~ 2774590 (+) False G35544
TU47557 lncRNA upstream 135474 2768526 ~ 2774058 (+) True G35544
TU47554 lncRNA upstream 150036 2759204 ~ 2759496 (+) True G35541
TU47620 lncRNA downstream 17219 3001003 ~ 3067663 (+) True G35584
TU47624 lncRNA downstream 30247 3014031 ~ 3053586 (+) True G35587
TU47626 lncRNA downstream 36692 3020476 ~ 3078404 (+) True G35589
TU47621 lncRNA downstream 239955 3223739 ~ 3224162 (+) True G35585
TU47677 lncRNA downstream 260447 3244231 ~ 3328507 (+) False G35618
XM_039798727.1 mRNA upstream 26769 2863536 ~ 2882763 (+) True ccdc51
XM_039797681.1 mRNA upstream 73404 2826889 ~ 2836128 (+) True LOC120557395
XM_039797682.1 mRNA upstream 73404 2826890 ~ 2836128 (+) False LOC120557395
XM_039797683.1 mRNA upstream 90742 2810258 ~ 2818790 (+) True LOC120557397
XM_039798837.1 mRNA upstream 164252 2735859 ~ 2745280 (+) True LOC120558018
XM_039798535.1 mRNA downstream 469816 3453600 ~ 3589612 (+) True epha8
XM_039799099.1 mRNA downstream 775710 3759494 ~ 3766040 (+) True c4h1orf50
XM_039797012.1 mRNA downstream 823388 3807172 ~ 3830945 (+) True nuf2
XM_039799131.1 mRNA downstream 910521 3894305 ~ 3913220 (+) True cfap92
XM_039798528.1 mRNA downstream 1231740 4215524 ~ 4242500 (+) True hdac11
TU47547 other upstream 161760 2747220 ~ 2747772 (+) True G35534
TU47274 other upstream 321370 2586175 ~ 2588162 (+) False G35364
TU47255 other upstream 414941 2487994 ~ 2494591 (+) True G35359
TU47237 other upstream 521558 2385615 ~ 2387974 (+) True LOC120556786
TU47185 other upstream 857407 2024294 ~ 2052125 (+) False asip1
TU47673 other downstream 297948 3281732 ~ 3358820 (+) False G35618
TU47674 other downstream 297948 3281732 ~ 3358820 (+) False G35618
TU47676 other downstream 297948 3281732 ~ 3328507 (+) True G35618
unassigned_transcript_179 other downstream 299147 3282931 ~ 3283002 (+) True trnae-cuc_2
unassigned_transcript_180 other downstream 302046 3285830 ~ 3285901 (+) True trnae-cuc_3

Expression Profile