RNA id: TU57449


Basic Information

Item Value
RNA id TU57449
length 1024
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G42727
representative True

Chromosome Information

Item Value
chromosome id NC_053115.1
NCBI id CM020912.1
chromosome length 44863486
location 30135986 ~ 30137009 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGAACTTGTGGTCCTTTTTGaattttgctctctctctcattaaATTAAATGCCAACAGGACAGAGTCAGAATCAGACATCGACGGGCGACGTTTTTTGTGATTGAACTCGAGCAGAAAGGAGGAGGCCTCCTCTGCCTCCAGATGCTTCTTCCTGGAAAAAGGGGGACTTCCTTCCCTCGCTCCTGTTAGTTAACGTCCTGCTTCAGCGCCGCTCAGCTCGCTACATTGGATGTTCGTGAGACGATCTGTGGTCGATCCTCTGTTCCAGAGGGGTGAGGGTGAGAGGGCACAGAGactttttaaaggaatacgtcacccaacattttcacttttcttATCAGTTTCTCATCCCTTGCAACCTGGACTGCTTGAGGAAACAATGTTTGTACTCACATTTCTTTTAACAGAATCAAAGACAGACATACATGCTTTCTCATGAGTACAAGAAAGTTATTGTGTGATCTCAATGTAATACATTTATTGAGATCAGAAAATTCTTGTTTTGGTCCTAGGATTGAAGGATAAATCTGGTGATATTTTGTccacaaatcccatgaaaagaccaaatcCAACTATGAACTGTTACCAATaacaagtattgtgtgtgtacgCAAAGCCTAAtatatcttcttcctctgtgccatagagcttaATTGTTGTCCAaacactattaaaaacacatcagtgagcaacactgttgcactgggtgacatgtttctTCATCACCATGAACACGCTCAGTGTAGTCTATTTTGtctcaatcccacatacaccgtcctgctgccacaTGTACCCACTAGAGCACCGAATGTGTATTAGTCcgctgctgaaaatagtccccaacaaatgcactatttattCCTGTTTAATCTTTGCTAAAAGCTACAGTGACCAGCTGTTTTGGggaagctgttttttttaagatcagtcttcagtaggaaccaatgggcttgggtctgagagccacagacaggtTAGGGATATCCAAAAGCAATGAGAGACAGATGGTTTTGgacttttca

Function

GO: NA

KEGG:

id description
ko00510 N-Glycan biosynthesis
ko03060 Protein export

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU57445 lncRNA upstream 26152 30109545 ~ 30109834 (+) False ergic3
TU57418 lncRNA upstream 95587 30036997 ~ 30040399 (+) True G42700
TU57377 lncRNA upstream 125978 30009037 ~ 30010008 (+) True G42675
TU57376 lncRNA upstream 130062 30002673 ~ 30005924 (+) True G42674
TU57373 lncRNA upstream 141208 29991923 ~ 29994778 (+) True G42672
TU57450 lncRNA downstream 5373 30142382 ~ 30143273 (+) True G42728
TU57448 lncRNA downstream 6369 30143378 ~ 30144325 (+) True G42726
TU57447 lncRNA downstream 7448 30144457 ~ 30145125 (+) True G42725
TU57478 lncRNA downstream 174586 30311595 ~ 30312042 (+) True G42752
TU57483 lncRNA downstream 181170 30318179 ~ 30332735 (+) True G42755
XM_039797120.1 mRNA upstream 152 30109535 ~ 30135834 (+) True ergic3
XM_039799137.1 mRNA upstream 29501 30102902 ~ 30106485 (+) True hesx1
XM_039798981.1 mRNA upstream 37753 30092167 ~ 30098233 (+) True LOC120558110
XM_039798414.1 mRNA upstream 47143 30086423 ~ 30088843 (+) True LOC120557789
XM_039797286.1 mRNA upstream 159995 29972493 ~ 29975991 (+) True LOC120557186
XM_039798602.1 mRNA downstream 57630 30194639 ~ 30198902 (+) False mych
XM_039798601.1 mRNA downstream 59277 30196286 ~ 30198902 (+) True mych
XM_039798610.1 mRNA downstream 217957 30354966 ~ 30377896 (+) True LOC120557912
XM_039798611.1 mRNA downstream 252001 30389010 ~ 30407845 (+) True LOC120557913
XM_039796713.1 mRNA downstream 291998 30429007 ~ 30442999 (+) False tomm34
TU57106 other upstream 893733 29240413 ~ 29242253 (+) True G42449
XR_005639013.1 other upstream 3437415 26653260 ~ 26698571 (+) False anks1ab
TU56292 other upstream 3587187 26542507 ~ 26548799 (+) False G41850
TU56293 other upstream 3587187 26542507 ~ 26548799 (+) False G41850
TU56251 other upstream 3862671 26268602 ~ 26273315 (+) True G41825
TU57834 other downstream 2323123 32460132 ~ 32460863 (+) True G43045
TU57843 other downstream 2333786 32470795 ~ 32471605 (+) True G43051
TU58042 other downstream 2900925 33037934 ~ 33041264 (+) False LOC120556790
TU58122 other downstream 3050729 33187738 ~ 33212318 (+) True G43277
XR_005639022.1 other downstream 3125186 33262195 ~ 33336767 (+) True angpt4

Expression Profile