RNA id: TU62535


Basic Information

Item Value
RNA id TU62535
length 251
lncRNA type inter_gene
GC content 0.55
exon number 2
gene id G46705
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2347782 ~ 2352561 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagcggTCCCCCCCGGAAgtggtgtttgttgttgtttgcccGTGCTGAGCAGCGGGAGCAGTGAGGAGAGAAGCCGTTAGCTGATTCCAGATCAGGGAATCCCGAACAGCGTTTAGTTTGTTCATCAGAGATGGAGCGACACCGGGAACACACGGAGGAGACCAAGCTGCGGGGAGAAGctTTACCTCCAGACATTCTGAAAGTGATTGTTGgtgaagaggagcagcaggagtgtagctccagtgtgcaCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005639279.1 lncRNA downstream 1504 2344485 ~ 2346278 (-) True LOC120559437
TU62531 lncRNA downstream 8920 2337348 ~ 2338862 (-) True G46701
TU62230 lncRNA downstream 149265 2190198 ~ 2198517 (-) False G46466
TU62228 lncRNA downstream 157736 2180796 ~ 2190046 (-) True G46466
TU62233 lncRNA downstream 167574 2130821 ~ 2180208 (-) True LOC120559423
TU62563 lncRNA upstream 111510 2464071 ~ 2465802 (-) True G46732
TU62578 lncRNA upstream 144418 2496979 ~ 2566450 (-) True G46746
TU62591 lncRNA upstream 169976 2522537 ~ 2523217 (-) True LOC120559435
XR_005639277.1 lncRNA upstream 170284 2522845 ~ 2523498 (-) False LOC120559435
XR_005639275.1 lncRNA upstream 308170 2660731 ~ 2662712 (-) True LOC120559433
XM_039801105.1 mRNA downstream 13145 2329654 ~ 2334637 (-) False LOC120559407
XM_039801093.1 mRNA downstream 19669 2322320 ~ 2328113 (-) True LOC120559398
XM_039801098.1 mRNA downstream 106684 2236290 ~ 2241098 (-) True LOC120559402
XM_039799515.1 mRNA downstream 242171 2058191 ~ 2105611 (-) True LOC120558496
XM_039799514.1 mRNA downstream 323344 2023301 ~ 2024438 (-) True LOC120558495
XM_039799529.1 mRNA upstream 38488 2391049 ~ 2392305 (-) True LOC120558508
XM_039801087.1 mRNA upstream 68163 2420724 ~ 2423312 (-) True LOC120559393
XM_039801091.1 mRNA upstream 96629 2449190 ~ 2462681 (-) True LOC120559396
XM_039801092.1 mRNA upstream 135981 2488542 ~ 2491124 (-) True LOC120559397
XM_039799535.1 mRNA upstream 180251 2532812 ~ 2545241 (-) True LOC120558513
TU62526 other downstream 278 2346505 ~ 2347504 (-) True G46698
XR_005639246.1 other downstream 12081 2329654 ~ 2335701 (-) False LOC120559407
XR_005639247.1 other downstream 12081 2334724 ~ 2335701 (-) False LOC120559407
XR_005639248.1 other downstream 16539 2329654 ~ 2331243 (-) True LOC120559407
TU61886 other downstream 1102657 1236385 ~ 1245125 (-) False rps21
unassigned_transcript_222 other upstream 591695 2944256 ~ 2944327 (-) True trnaq-cug_2
unassigned_transcript_223 other upstream 592292 2944853 ~ 2944924 (-) True trnaq-cug_3
TU62665 other upstream 930480 3283041 ~ 3285923 (-) True G46817
TU62955 other upstream 1602465 3955026 ~ 3955529 (-) True G47058
TU62956 other upstream 1603043 3955604 ~ 3956382 (-) True G47059

Expression Profile