RNA id: TU62563


Basic Information

Item Value
RNA id TU62563
length 1682
lncRNA type inter_gene
GC content 0.41
exon number 3
gene id G46732
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 2464071 ~ 2465802 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttaataaatatattttccccctctgatattgaggaggagttaaTTTTACGATTTGAGTGCTGTTGCATGCGCAGGAACCGTTGATATGATGACGCGGCGCGCGGCGGCAGACCGtcagtaaacaacactggctatggctagtaggctaacttaacgtcatggatccctctcatgggcgccgataccgtgggtgctcaagctccggagcacccacggaaaatactgaccgCCCAcgagtgccagactgccagttcatttttacgttaatctaaaatgaaacactgcagttgtggagcgtctgtcatagtgtgattggttatgtcggtggcatttcccacaaagctgatcgcggttacgtgccagttaaacttttcatctccgatcctatctgtatttgtgagaagtggcgctgtcctgagttgaaagatagcttataggctaggcctactgtgcgcgtgtgagcacccacggaggaaaacataaatcggcgcctatccctctgcacagaaaataataaagtttggctataaggattacacatatgaccaggcaaagaaaaaaaagaaacggcaGTTTGCAAGGTCTGCAGTACTTATTTCCGACGTCTaatttcatcagacacttcaaatcgggagagattcgggttccagtccccatattcagctgaacctctatttggacgtttgtgatggacagaagtcccttcagtttttggccatgaataagcacaccctcccctctttgttcAAGGTGGCGGTAGAGCGAATAAAACTAggcacacataggcctacacacacaacacaaacctctctctctctctctctctctctctctctcataaacacacacacatgcagacgtaagtatgtgaataaagctaggcacacatacaacgcactctgcactctcacacacacgcacattcactcaccaatattaataacttttcactctctctttctcaaacacgcacagattcactcacaaatacactgtcaaatatcaacatatactttccattccatgtgataagCAAATGTGGTGGGATTCAGCTATTCTCAAAGAATAGGTTTTgttctttaagagaaggaaaggttaaaggatgtgtttctgtctcataaaagtgagccatgtttgaagaatattatttgacttaggaACCATTATACTTTAATTGTTTGAAGGAATTTCATGATTTAATGTCATGTTTGAGGCACATTGAACAATATTGAtaatatcagttttaggctgtgattttttttatctgtgttaatttaaactcttcagatgtatgtgGACACAAAGTCTTTtgagtaaaaaatgcaaataaaactccagcagttcataaccactgtctttagcttgtttaaaaatggaaacttttgcatgacttgacttgtgacttgcttgaccaaagctatgacttgacttgacttgcttgattgtcacaaaaaatgacttggacttgcttgagacttgaaggttaagacttgagacttgcttgcgacttgcacatgtgtgacttactcccatctctggTATAATGTCGGggagccaagcaaacccttaatcaaagcttttagtaaacatgatgacattaacatgtttttgtgatatatgtactcctgacagaataagccattataaacctatataaaggtggcccattattgatggccca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU62535 lncRNA downstream 111510 2347782 ~ 2352561 (-) True G46705
XR_005639279.1 lncRNA downstream 117793 2344485 ~ 2346278 (-) True LOC120559437
TU62531 lncRNA downstream 125209 2337348 ~ 2338862 (-) True G46701
TU62230 lncRNA downstream 265554 2190198 ~ 2198517 (-) False G46466
TU62228 lncRNA downstream 274025 2180796 ~ 2190046 (-) True G46466
TU62578 lncRNA upstream 31177 2496979 ~ 2566450 (-) True G46746
TU62591 lncRNA upstream 56735 2522537 ~ 2523217 (-) True LOC120559435
XR_005639277.1 lncRNA upstream 57043 2522845 ~ 2523498 (-) False LOC120559435
XR_005639275.1 lncRNA upstream 194929 2660731 ~ 2662712 (-) True LOC120559433
XR_005639274.1 lncRNA upstream 194929 2660731 ~ 2661466 (-) False LOC120559433
XM_039801091.1 mRNA downstream 1390 2449190 ~ 2462681 (-) True LOC120559396
XM_039801087.1 mRNA downstream 40759 2420724 ~ 2423312 (-) True LOC120559393
XM_039799529.1 mRNA downstream 71766 2391049 ~ 2392305 (-) True LOC120558508
XM_039801105.1 mRNA downstream 129434 2329654 ~ 2334637 (-) False LOC120559407
XM_039801093.1 mRNA downstream 135958 2322320 ~ 2328113 (-) True LOC120559398
XM_039801092.1 mRNA upstream 22740 2488542 ~ 2491124 (-) True LOC120559397
XM_039799535.1 mRNA upstream 67010 2532812 ~ 2545241 (-) True LOC120558513
XM_039799554.1 mRNA upstream 103008 2568810 ~ 2570974 (-) True LOC120558520
XM_039801095.1 mRNA upstream 150558 2616360 ~ 2617600 (-) True LOC120559399
XM_039799555.1 mRNA upstream 161920 2627722 ~ 2629202 (-) True LOC120558522
TU62526 other downstream 116567 2346505 ~ 2347504 (-) True G46698
XR_005639246.1 other downstream 128370 2329654 ~ 2335701 (-) False LOC120559407
XR_005639247.1 other downstream 128370 2334724 ~ 2335701 (-) False LOC120559407
XR_005639248.1 other downstream 132828 2329654 ~ 2331243 (-) True LOC120559407
TU61886 other downstream 1218946 1236385 ~ 1245125 (-) False rps21
unassigned_transcript_222 other upstream 478454 2944256 ~ 2944327 (-) True trnaq-cug_2
unassigned_transcript_223 other upstream 479051 2944853 ~ 2944924 (-) True trnaq-cug_3
TU62665 other upstream 817239 3283041 ~ 3285923 (-) True G46817
TU62955 other upstream 1489224 3955026 ~ 3955529 (-) True G47058
TU62956 other upstream 1489802 3955604 ~ 3956382 (-) True G47059

Expression Profile