RNA id: XM_039801849.1


Basic Information

Item Value
RNA id XM_039801849.1
length 2046
RNA type mRNA
GC content 0.41
exon number 8
gene id srm
representative True

Chromosome Information

Item Value
chromosome id NC_053116.1
NCBI id CM020913.1
chromosome length 44101041
location 24360952 ~ 24365511 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTAGCTGTCAAACAACGGTCAAGTGTCACACATTGCCACACTTACAAACACGTTAGTACTATTATTTGTGGCCGTAGTCAGCTGTCATGGAGTACATAAAGGATGGGTGGTTTACGGAAACATGCACGCTATGGCCGGGGCAAGCGATGAGCCTCCAAGTGGAAGAAGTCCTCTACCACAAGaaatccaaatttcaagatGTTATGGTTTTCAAGAGTAAAACCTATGGGAATGTCTTGGTGCTGGATGGAGTGATACAATGCACAGAGAGAGATGAGTTTGCCTATCAAGAGATGATTGCCAACCTTCCCCTGTGCAGTCACCCTTGCCCCAAGAAGGTGCTGATTATTGGCGGTGGAGATGGTGGCGTGCTAAGGGAAGTGGTGAAGAATCCTCTGGTGGAATCGGTGGTTCTGTGTGAGATAGATGAGGATGTCATTAATGCATCCAAGAAGTTCCTCCCTGGGATGGCCAAAGGGTTTTACAGTCCCAAGCTCATCCTCCATGTTGGAGACGGCTTTGAATTCATGAAGAAGAACCAGGATGCCTTCGACATCATTATAACCGATTCCTCAGACCCTGTTGgaCCTGCTGAGAGTTTGTTCAAGGAGTCTTACTATCAACTGATGAAGGCAGCGTTGAGAAACGGTGGAATTCTTTGTTCCCAGGGAGAGTGTCAATGGCTCCATTTGGAGCTGATAAAGGAGATGCGAACCTTCTGCAAGACCCTATTCCCTGTGGTGGACTATGCCTACAGCACCATCCCAACATATCCCAGTGGGCAAATTGGATTCATGCTCTGCAGTACAAATCCTGAAACAAATTTCATGGAACCAATGAGAGCGCTGTCAAAAGAAGAAATGGAAAATATGAACCTTAGATATTACAACCCTGAAATTCACAAAGCATCCTTCGTCCTGCCTGAGTTTGCAAAAAagGTACTCAATGAAGCATGACCAAAAACAACATACCACTATGTTCAACCTCTAGCTGGCACTCAGACCACAGATCAACAACCTTGTTCTACGGCTTCTTCACCTCCTCAACGCAGTTCAGCACCACTGAAGAGAGTAGCCTCCTAAAGATTTTAGGGCTGGGGGTACCTAATAATCAGTGGGTGGGAATGCACTGAGTGATACAGTGAAAGTGTTTGTTCCAATGTTTTCTTCCTTCCAGTCTTACACGCTcttggtgtttttatttattttactgatgtatggttgttttttgttttttttgtcatttttactcTGTAATTGTTTTATCAGCGTTTTGCGGAGAGCAATTTAATGGGCTGGGCTGAGTGGGGAAGAGCATTGCCGTCAAATCTGACCTCACTCTGAAACTGTGTACTGTCTATCGGATTCAATGCATCTACACATTATGTAATACATTACATACCACATAGAGGTTGTACATGTAATGTATTGCTGTACTTTTATGTGTAATATTTAATATCGGTTTGTGCTCATAGGAAAATACACAGTTGCCATCATGTCATGACTGTATATTCAGAATACTAATGTGTCCTCTATACACATGAACCCTATAGTGCCTGAAATTGGTTgttgttgatttaaaaaaaaaaaagacttgttaTGTATCTATTAAAGTGTACCGGGCACATATAGTGGCCTAGAAGAAAGCTCTAAGTGTCAATAGTTGAGAAAAGtgtcccttttaaaaaaaatcaccaatTTAACATTAAATAAATCTGCTCAGCTTTGACTTATCAATTTGATATGGAATTATTTGTTACAgttttaaaatgcaaattaagcAAACATGTAAAATTGCACTGGAGCTTTGCAATGTGGGAAATGTAAATTAATTATGCAGTGATTAACTTTCTGTATTGGGTATTGACTACCTGTGGTAGGCTTGGACTGTGGTGAGCCTGTATGCGGAGTCATTACATGGTCAAACATCTTCAGTTAGTACCTGTTACAAGTCTACTTAGAATCGGTTGAGAAATGGTGTCAAATACCTGAGCAATGaatttatgacttttataaGAACTGTAATAAATTGGTAACATAAAATGGT

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016740 transferase activity molecular_function

KEGG:

id description
K00797 speE, SRM, SPE3; spermidine synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU70422 lncRNA downstream 33976 24325020 ~ 24326976 (-) True G52732
TU70390 lncRNA downstream 252238 24108484 ~ 24108714 (-) True G52706
TU70373 lncRNA downstream 347701 24012963 ~ 24013251 (-) True G52692
TU70357 lncRNA downstream 359320 23995628 ~ 24001632 (-) True G52679
TU70443 lncRNA upstream 1638 24367149 ~ 24367469 (-) True G52746
TU70480 lncRNA upstream 20392 24385903 ~ 24386621 (-) True G52765
TU70500 lncRNA upstream 100523 24466034 ~ 24468019 (-) True G52776
TU70571 lncRNA upstream 340006 24705517 ~ 24706004 (-) True G52818
TU70661 lncRNA upstream 555205 24920716 ~ 24945315 (-) True G52883
XM_039801166.1 mRNA downstream 2941 24356788 ~ 24358011 (-) True cort
XM_039799377.1 mRNA downstream 21513 24335316 ~ 24339439 (-) True masp2
XM_039801311.1 mRNA downstream 41949 24266174 ~ 24319003 (-) True pex14
XM_039801312.1 mRNA downstream 41949 24266654 ~ 24319003 (-) False pex14
XM_039801003.1 mRNA downstream 339080 24008001 ~ 24021872 (-) True tardbpa
XM_039800738.1 mRNA upstream 4907 24370418 ~ 24384608 (-) True exosc10
XM_039800740.1 mRNA upstream 24686 24390197 ~ 24427068 (-) True cntn3a.2
XM_039800741.1 mRNA upstream 28703 24394214 ~ 24427068 (-) False cntn3a.2
XM_039800285.1 mRNA upstream 269260 24634771 ~ 24671798 (-) False si:dkey-178k16.1
XM_039800284.1 mRNA upstream 269260 24634771 ~ 24671798 (-) False si:dkey-178k16.1
TU70430 other downstream 21496 24335149 ~ 24339456 (-) False masp2
TU70089 other downstream 1041268 23308500 ~ 23319684 (-) True G52501
XR_005639228.1 other downstream 1142052 23214098 ~ 23218900 (-) False si:ch211-150o23.3
XR_005639229.1 other downstream 1142052 23214098 ~ 23218900 (-) False si:ch211-150o23.3
TU69738 other downstream 1830244 22529606 ~ 22530708 (-) True G52226
TU70611 other upstream 384929 24750440 ~ 24753087 (-) False phactr3a
TU70950 other upstream 1581870 25947381 ~ 25972172 (-) False acot7
TU71098 other upstream 1847482 26212993 ~ 26214882 (-) True G53196
XR_005639354.1 other upstream 2281303 26646814 ~ 26658321 (-) False dcp1a
XR_005639355.1 other upstream 2281303 26646814 ~ 26658321 (-) False dcp1a

Expression Profile