RNA id: XM_039803608.1


Basic Information

Item Value
RNA id XM_039803608.1
length 2221
RNA type mRNA
GC content 0.51
exon number 13
gene id si:ch211-204d2.4
representative False

Chromosome Information

Item Value
chromosome id NC_053117.1
NCBI id CM020914.1
chromosome length 43979800
location 18389111 ~ 18400741 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GATCCACACTCCGAAGCAGAAGGTGGTGGTAATGCACTTTAATACGCTGGTTGCCAAGCGCCGTTGAAACCCAAAAAGAAGCAGAATAGAGGAGGAGGACCCGGGCCGGAGCAGAGGACACATAGATCACATCCGGGGCTGGTTTATTCTAATAACCAAACGTCCAACCCGGAAAAAAAGATATCTCTTCTGTAATCCgatcacacaaacaaacagacaagagTATTCGGGTCTCTCCTCTGTGCTTCGGAGCCGTGCGGGGCGCTGGCTGTGGCGCACACTGACTCCACAGCGGCAGCATGCCATACGTGGACCGGCTGAACCGCGTATGCGGCTTCCTGGACATCGAGGAGAAGGAGAACAGCTGCCGCTTCCAGAGGCGATACTTCATCCTCGACACGCAAGAAAATGCTCTTCTGTGGTATATGGACAACCCTCAGAACCTGCCCAGTGGAGCGAGCTTTGTTGGCAGCCTGAAACTAACCTACATCTCTAAGGTGAGCGAAGCTACAGCAAAGCAaaagccaaagacagagttCTGTTTTGTCATCAATGCAGTTTCCCGGAGGTACTTCCTCCAAGCCAACGATGTGACTGACATGAGGGACTGGGTGGCTGCTCTCAACAAAGCCAGCAAGATAACCGTTCCTAAGTCTGGCCCTGCACCTCCAAGGTCCGATGTGTCCGCAGTCATCAGCGACACTCAGGGAGGGAAGAGACAGCACGCCTACAAGACTGAGATCATCGGCGGCGTGGTGGTGCACACTACCATCCAGAATGAGTGCGAAGAgacagaagggagagagaggaagggcaACCGGCCAGGCGTGCTGAGGTGCGGTTACTGTGTCAAACAGGGAAATGTGaggAAGAGCTGGAAAAGGAGGTTTTTCACCCTAGATGACAATGCAGTCAGTTACTACAAGTCTGAAATGGATAAGGAGCCTCTCCGAGCCGTTCCACTGAGGGACATTCAGAAGGTCCATGAATGTCTCGTCAAGTCAGGGGATCTCCTGCTGAGAGACAACCTGTTTGAGATCATCACCAGCTCCCGAACCTTCTACATTCAGACAGACTCTCCGGAGGAGATGCATGGCTGGATCAGGGACGTTGAgatgaagatccaggacttcaGAGGTCCCCCTAAGggtttttcatttaaacgtGCGTCCTCTCTCTATCGAAGTCCCAATGCCTCCTCAGCGCCTCGAGGCCAACAGAGTGATGAGCGCAGACCTCCACTGGTCAAGTCCTGCTCTGTGGCGCCGGGCTGGCAGCCCTGGACGCCTGTCCCTCCGTGTGAGCCTTCCATCCTGGATGCAGAGGATGAAGACAGTGCTTTCAGCTCTGTGCCCACCTtgccttctctctcctcttcctccacctcttcctccacctcctcctcctccaactCCCTCTCCGCCCCGATCCCTTGCCCCAATGCACCTCCAGCAGCTTCAATCAGCGGACTGGGGATCCTCACAGCGTCGGGAGATGTGGCCAGCGGGCGTCGGAGGCACCGCTCGCAGCCTCAGCCTCACACCGGCTGCAGCTTCCCCTTCAGCCTGGACGACGACAGCCTCCGCACCACGGACGTCTAAGTTCAGTAAAATCTGTCCAGACTCCTGTGTGGACTTGAGTGTTGGTACTtgctttaaaatgaatgtgaCTATTAATAATAGTATTCCCTGCTAATGAAGTGACACTGTGACCATCTGCCCGGATGCCATGACGTGAGATTGGGGTCTCCTGTTGGTTTTGTAGCTGTAATGCAGACGAAGGATGGACCCAGCTGGAAGGGGACCAAGAGGCGCAGTGTTTGTTGTTCACAGGACTGTGAAGAAGTATGATGGAGAATTTTTAGTTTAACTTCCTCTGAAAACTTGAATAATCTTGTTGTTAATTGTTCTTGCAGACTTACAAATTATGGCACATGCTTTCGATCGGTTGCACTTGGCTCCCCTCGGAGATATAAATCATAAAGAACGTGTTTTCAACCCCGCTAGAAGTATTCACCAAGAAGTGTTTAAAGGCATTTAAACACATTACAGTCTATCGTTTTTATATTCAAGCTTATGTTCacaaaatacttttaaaaaaggtgggtctttttagttttttcttgcCTCCTTCTTCCTGAGACAAACATTATGTGACATTAACTTACCTTCGTTAATAATTAACAAACATTGTATTACTAACGTCTAATCAGGTTTCAGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU83741 lncRNA upstream 626 18365280 ~ 18388485 (+) True G62533
TU83694 lncRNA upstream 67953 18320643 ~ 18321158 (+) True G62508
TU83688 lncRNA upstream 74334 18313211 ~ 18314777 (+) True G62502
TU83666 lncRNA upstream 92208 18293260 ~ 18296903 (+) False G62484
TU83734 lncRNA downstream 40621 18441362 ~ 18474731 (+) False tpcn1
TU83749 lncRNA downstream 56757 18457498 ~ 18459249 (+) True G62540
TU83769 lncRNA downstream 97222 18497963 ~ 18498301 (+) True G62557
TU83771 lncRNA downstream 97889 18498630 ~ 18498972 (+) True G62558
TU83739 lncRNA downstream 99137 18499878 ~ 18500121 (+) True G62532
XM_039803603.1 mRNA upstream 2858 18382949 ~ 18386253 (+) True si:ch211-113d22.2
XM_039803604.1 mRNA upstream 2858 18382952 ~ 18386253 (+) False si:ch211-113d22.2
XM_039803520.1 mRNA upstream 6516 18365745 ~ 18382595 (+) True LOC120560725
XM_039803109.1 mRNA upstream 35275 18345814 ~ 18353836 (+) False ddhd2
XM_039804356.1 mRNA downstream 6607 18407348 ~ 18419214 (+) True tbx5b
XM_039802175.1 mRNA downstream 32076 18432817 ~ 18437190 (+) True cfap73
XM_039802176.1 mRNA downstream 32076 18432817 ~ 18437190 (+) False cfap73
XM_039803228.1 mRNA downstream 40606 18441347 ~ 18455076 (+) True tpcn1
XM_039802331.1 mRNA downstream 174247 18574988 ~ 18587715 (+) True si:dkey-98f17.5
TU83701 other upstream 57881 18330705 ~ 18331230 (+) True G62513
XR_005639579.1 other upstream 379793 17998686 ~ 18009318 (+) False cmya5
TU83072 other upstream 1854962 16533329 ~ 16534149 (+) False LOC120560897
TU83070 other upstream 1913206 16468367 ~ 16475905 (+) False LOC120560890
XR_005639530.1 other upstream 1913214 16468323 ~ 16475897 (+) False LOC120560890
TU83742 other downstream 6646 18407387 ~ 18416006 (+) False tbx5b
TU83744 other downstream 15387 18416128 ~ 18419590 (+) False tbx5b
XR_005639481.1 other downstream 260416 18661157 ~ 18681161 (+) False acacb
TU84360 other downstream 1034166 19434907 ~ 19448950 (+) False rasl10a
XR_005639482.1 other downstream 2077071 20477812 ~ 20488838 (+) False wdr31

Expression Profile