RNA id: XM_034313124.1


Basic Information

Item Value
RNA id XM_034313124.1
length 503
RNA type mRNA
GC content 0.49
exon number 4
gene id LOC113543528
representative False

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2316651 ~ 2317885 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ACGAGACGTCCCTGtggaactgcagatttcagctgaGTGAAGAGGGAGAATGTGGACACCATGAGGACGTAGGAGTCGtgtgctcagagtttaaagagatccgactcacggagggctgtgaggggaatctggaagtgttctacaatggaacctggggtaatgtgtgtcacaatcagatggatgatgagacagtaaacatggtgtgtcgagagctgaactgtggaagAAGTGGCAGTCTGTCAAACGCTGAAGCACGAGTAAAATCTGCTCCTAACTGGCTGGATTATCTGAAGTGTAGGAAACACGACTCTAACCTGTGGCAGTGTCCATCTTCACCCTGGGGACAGAACAGATGTGATAATCGTGATGAGGTGGCTCGTATTACCTGCACAGatgaTGGAAAGTCTCTACATACGCAAGAAAAGTGCTCTTCATTTCCCTCTCAGAAACATTGCTCAAagcactggtctctcaggctgagtggaggaaagggaagctgctct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326333 lncRNA upstream 704 2315636 ~ 2315947 (+) True G275344
TU326326 lncRNA upstream 124713 2190592 ~ 2191938 (+) True LOC117599472
XR_004579881.1 lncRNA upstream 125613 2190036 ~ 2191038 (+) False LOC117599472
TU326315 lncRNA upstream 171729 2142994 ~ 2144922 (+) True LOC117599480
TU326283 lncRNA upstream 498027 1817006 ~ 1818624 (+) True LOC117599482
XR_004579915.1 lncRNA downstream 34063 2351843 ~ 2353678 (+) False LOC117599502
TU326346 lncRNA downstream 39909 2357689 ~ 2360053 (+) True G275353
TU326359 lncRNA downstream 278664 2596444 ~ 2600871 (+) True LOC117599473
XR_004579882.1 lncRNA downstream 278665 2596445 ~ 2600453 (+) False LOC117599473
XR_004579883.1 lncRNA downstream 278665 2596445 ~ 2600450 (+) False LOC117599473
XM_034312974.1 mRNA upstream 1337 2314573 ~ 2315314 (+) True LOC117599434
XM_034312973.1 mRNA upstream 783805 1531424 ~ 1532846 (+) True LOC117599433
XM_034312969.1 mRNA upstream 997102 1318211 ~ 1319549 (+) False LOC117599429
XM_034312966.1 mRNA upstream 1089746 1018373 ~ 1226905 (+) True LOC113543470
XM_034312961.1 mRNA upstream 1495485 814169 ~ 821166 (+) False LOC117599424
XM_034312977.1 mRNA downstream 307622 2625402 ~ 2628545 (+) True LOC117599437
XM_034312979.1 mRNA downstream 315822 2633602 ~ 2645389 (+) True LOC113525606
XM_034312983.1 mRNA downstream 392365 2710145 ~ 2724355 (+) True LOC113524705
XM_034312984.1 mRNA downstream 414400 2732180 ~ 2754997 (+) True LOC117599442
XM_034313098.1 mRNA downstream 519810 2837590 ~ 2944638 (+) True nav3
TU326331 other upstream 1912 2308693 ~ 2314739 (+) False LOC117599434
XR_004579893.1 other upstream 172755 2143401 ~ 2143896 (+) False LOC117599480
TU326306 other upstream 286409 2028193 ~ 2030242 (+) True G275319
XR_004579895.1 other upstream 499166 1816986 ~ 1817485 (+) False LOC117599482
XR_004579892.1 other upstream 778905 1537260 ~ 1537746 (+) True LOC117599479
TU326361 other downstream 314656 2632436 ~ 2632994 (+) True G275365
TU326343 other downstream 317728 2635508 ~ 2638207 (+) False LOC113525606
TU326697 other downstream 939874 3257654 ~ 3260282 (+) True G275657
TU326698 other downstream 939874 3257654 ~ 3260282 (+) False G275657
TU327267 other downstream 1388030 3705810 ~ 3709250 (+) True G276159

Expression Profile