RNA id: XM_034312977.1


Basic Information

Item Value
RNA id XM_034312977.1
length 726
RNA type mRNA
GC content 0.53
exon number 3
gene id LOC117599437
representative True

Chromosome Information

Item Value
chromosome id NC_047612.1
NCBI id CM018558.1
chromosome length 23372418
location 2625402 ~ 2628545 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gggagagtggaggtgtttcatggaggttcctggtccacagtgtgtgatgctgactttgaccagcaggatgcagaggttgtgtgtcgagagctgggctgtgggattcctgtggaggtgctgggatcagctgcttttggccgaggggagggtcaggtgtggacagaggagcttcagtgtagaggaACCGAATCTGAGATTATcttctgtccaacatcatcttcactcaaacactcagactgctcccattacaacgatgtgggattaaaatgttctggctcagGAACTGTAAagttggtgaatggtggaagtcgctgtgctgggagagtggaggttcttcatgatggacagtggggaacagtgtgtgatgattactgggatatgagagaagctgcagtggtgtgtagagagctgggctgtggggagcctgtaaatGTGCGGTATGGACGTGACTTTGAACCAGGTtcaggaccaatctggatggatgatgtggactgtagaggatcagagtcgacactgaagaactgtagTTCACGAGGGTGGGGGATCAGTGACTGTTATCATGTTCatgatgctggagtcacctgctcagGCTCAAAGGGGGGtttacagagagcctctaaagccacggccaggtcccaagGAGGGACCCGAGATCGCACTGGACGTCTgagcctcagcgcaccgcggaggaaatGTGTAACCaaggggtgcctgcccactgactga

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG:

id description
ko00053 Ascorbate and aldarate metabolism
ko00260 Glycine, serine and threonine metabolism

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326359 lncRNA upstream 24531 2596444 ~ 2600871 (+) True LOC117599473
XR_004579882.1 lncRNA upstream 24949 2596445 ~ 2600453 (+) False LOC117599473
XR_004579883.1 lncRNA upstream 24952 2596445 ~ 2600450 (+) False LOC117599473
TU326346 lncRNA upstream 265349 2357689 ~ 2360053 (+) True G275353
XR_004579915.1 lncRNA upstream 271724 2351843 ~ 2353678 (+) False LOC117599502
TU326614 lncRNA downstream 192317 2820862 ~ 2822124 (+) True G275592
TU326632 lncRNA downstream 263948 2892493 ~ 2892729 (+) True G275610
TU326668 lncRNA downstream 360616 2989161 ~ 2989428 (+) True G275629
TU326678 lncRNA downstream 498529 3127074 ~ 3127594 (+) True G275638
TU326679 lncRNA downstream 513026 3141571 ~ 3141868 (+) True G275639
XM_034313124.1 mRNA upstream 307622 2316651 ~ 2317780 (+) False LOC113543528
XM_034312974.1 mRNA upstream 310088 2314573 ~ 2315314 (+) True LOC117599434
XM_034312973.1 mRNA upstream 1092556 1531424 ~ 1532846 (+) True LOC117599433
XM_034312969.1 mRNA upstream 1305853 1318211 ~ 1319549 (+) False LOC117599429
XM_034312966.1 mRNA upstream 1398497 1018373 ~ 1226905 (+) True LOC113543470
XM_034312979.1 mRNA downstream 5057 2633602 ~ 2645389 (+) True LOC113525606
XM_034312983.1 mRNA downstream 81600 2710145 ~ 2724355 (+) True LOC113524705
XM_034312984.1 mRNA downstream 103635 2732180 ~ 2754997 (+) True LOC117599442
XM_034313098.1 mRNA downstream 209045 2837590 ~ 2944638 (+) True nav3
XM_034313332.1 mRNA downstream 338054 2966599 ~ 3201217 (+) False syt1a
TU326323 other upstream 272360 2170002 ~ 2353042 (+) True LOC117599502
TU326337 other upstream 307517 2316695 ~ 2317885 (+) True LOC113543528
TU326331 other upstream 310663 2308693 ~ 2314739 (+) False LOC117599434
XR_004579893.1 other upstream 481506 2143401 ~ 2143896 (+) False LOC117599480
TU326306 other upstream 595160 2028193 ~ 2030242 (+) True G275319
TU326361 other downstream 3891 2632436 ~ 2632994 (+) True G275365
TU326343 other downstream 6963 2635508 ~ 2638207 (+) False LOC113525606
TU326697 other downstream 629109 3257654 ~ 3260282 (+) True G275657
TU326698 other downstream 629109 3257654 ~ 3260282 (+) False G275657
TU327267 other downstream 1077265 3705810 ~ 3709250 (+) True G276159

Expression Profile