RNA id: XM_026912785.2


Basic Information

Item Value
RNA id XM_026912785.2
length 2862
RNA type mRNA
GC content 0.47
exon number 22
gene id lss
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21470895 ~ 21481879 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACAGCGAGGGGAGGAACGACGGTGTCGGACGAAATTTGACTCGCAGTATTTCAACTCAAGGAGATGTTTAACCATGCAGTGCAAAGATGACTGAAGGGACGTGTGTGCGGAGAAGAGGGGGTCCCTATAAGACTACAGCAGTGACAGACCTGACTCACTGGAGGCTCAGTAATGTGGAAGGAAGGCAGACATGGAGATACCTGAAGGATGAAGACACTAAGGAGAGGGAGCAGAATTTCTTGGAGGCTCACTCTGTGGGTCTTGACACGAGTAAGTTTGTTCCAGCCTCCCCAGCAGCACACACAGTGGTTGAAGCTGCTCAGAAGGGGATGGAGTTTTACAGCCTTCTCCAGGCTGAAGATGGCCACTGGGCTGGAGACTACGGAGGACCACTTTTCTTGCTTCCAGGTCTCCTCATAACCTGTCATGTTGCTAAAATCTCTCTGTCAGAAGCCTGGAAGAAGGAGATGGTGAGGTATCTACGTTCAGTGCAGCTGCCAGATGGTGGCTGGGGTCTGCATATAGAAGACAAGTCGACTGTATTTGGCACAGCGCTCAGTTACACCACACTGAGAATCCTGGGAGTTGGGCCTGATGACCCAGATATGGTGCGGGCAAGGAACAACTTACACAGCCAAGGAGGTGCTGTAGGTATACCGTCCTGGGGAAAGTTCTGGTTGGCCATCCTCAATGTCTACAGTTGGGAAGGGATGAACACGCTCTTTCCAGAGATGTGgCTGTTTCCGACTTGGATGCCAGCGCACCCATCCACTCTGTGGTGCCACTGCAGGCAGGTCTACCTTCCCATGAGCTACTGTTATGCCATCAGATTGTCTGCACAGGAGGACTCGCTGGTGCGCAGCTTGAGACAGGAACTGTATGTCCAGGACTATTCAACTATTAACTGGCCAGCTCAAAGAAACAATGTTGCAGCATCAGACATGTACACCCCTCACAGCACTCTGCTCACTGCCATCTACCCCATCCTGAACCTATATGAGGCTCATCACAGTACTGCACTGAGAGAAAAAGCTGTGAAAGAACTGTACGATCACGTGCAAGCAGATGATCGCTTCACAAATTGCATTAGCATCGGGCCGATCTCAAAAACCATTAATATGTTGGTGCGCTGGCATGTTGATGGACCCACGTCAGCTGCCTTTCAGGAACATGTGGCGAGGATCCCAGACTACCTCTGGCTAGGTCTTGATGGTTTGAAGATGCAGGGAACCAATGGATCTCAGCTATGGGACACTGCCTTTGCAGTACAAGCATGTCTTGAGgcagGTGCACAGACTGACCCCAGGTTTACACAGTGTTTAATGAAGGCCCACCAGTTCTTTAATCTAACCCAGgTTAAAGAAAATCCCCCAGACTACAAGAAATATTACAGACAAATGAACAAGGGAGGCTTTCCCTTCAGCACACGTGACTGTGGTTGGATTGTAGCTGACTGTACAGCAGAGGGCCTGAAGTCAGTGATGTTACTGCAGGAGCAGTGCAGCTTCATCACGGAGCACATTCCCTCACAAAGACTCTTTGATGCAGTCAATGTGCTTTTAAGCATGAGAAATTCTGATGGTGGCTTTGCTACATATGAGACCAAACGTGGAGGAAAACTGCTGGAGCTGCTCAACCCGTCAGAGGTGTTTGGTGATATCATGATCGACTACACCTATGTGGAGTGCACATCAGCTGTGATGCAAGCTCTGCAGCACTTCCATCATGCTTATCCTGAGCACAGAGCACAGGAGATTAGGAGTACTCTTCAGCAGGGACTTGACTACTGCAGAAGGATGCAAAGACCTGATGGTTCATGGGAAGGATCATGGGGTGTGTGCTTTACATATGGAGTATGGTTTGGATTGGAGGCGTTTGCGTGCATGGGTCATGTTTTCCAGGATGGATATGATGGACTGGTGTGTGCTGAGGTGAGGCGTGCCTGTGACTTCCTGCTTTCTAAGCAGATGGAGGATGGAGGTTGGGGAGAGGACTTTGAGTCGTGTGAGCAGAGGTGCTATATACAAAGCAAAACTTCCCAGATCCATAACACCTGCTGGGctctgctgggtctgatggctGTCAGGTACCCTGACACCACAGTCATTGAGCGTGGAATACAGGTTTTGATTGACAAGCAGCTTCCCAATGGAGACTGGCCACAAGAGAACATCTCTGGTGTATTCAACAAGAGTTGTGCTATCAGTTACACATCGTATAGAAACGTGTTTCCAGTCTGGACTCTGGGCCGTTTCTCACGTCTCTACCCCTCCAGCTCACTTGCTCGGAACCTGGGAGGCACTGAGAGATAACCTATGatgtgtttaatttcattttggGTCTAACTGCCTGGGGAAAATTTCACTTTCATACAAACTGATTTGCTGCTTTTAGGACTGACCAGTAACTGCACAGTGCCCGTAGCAGGAGATATTCGAAACATATAGCCATAAATGAATGCAAGCATAATATCATCTTTGTATTGACAAGGAAGTGTATTTTGGGTCTTTTCAAGTAAATTCTGAGTTTATTACAAGCATCTAAGTACACCCCTCCCTATCTTtgcctctttcacacacacacatttcctcacACTGTTAATTATAAATAGGGATATACACACTGTCACtgatgcatgcacacacactcacaagagAGAGTGACACCAATCCAGAagtgtgtttaaattattttttcccaaaaccTAGTAACTTACATTAGATTTCcatgaattattttatgaattattgaaatattatgcttgttattcaaatgtgtacatgaAGATGACATTACATATAGCCCTGCTTATTTTTCAGTTAAGGTTTGGATTAagcctaattaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0016866 intramolecular transferase activity molecular_function

KEGG:

id description
K01852 LSS, ERG7; lanosterol synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004578188.1 lncRNA downstream 11491 21457733 ~ 21459404 (-) True LOC117597354
TU102902 lncRNA downstream 11565 21457735 ~ 21459330 (-) False LOC117597354
TU102905 lncRNA downstream 11565 21457735 ~ 21459330 (-) False LOC117597354
XR_004578189.1 lncRNA downstream 11813 21457733 ~ 21459082 (-) False LOC117597354
TU102830 lncRNA downstream 26811 21442896 ~ 21444084 (-) True G86621
TU102933 lncRNA upstream 127979 21609858 ~ 21610135 (-) True G86713
TU102939 lncRNA upstream 133109 21614988 ~ 21615996 (-) True G86716
TU102942 lncRNA upstream 139771 21621650 ~ 21621874 (-) True G86719
TU102949 lncRNA upstream 152269 21634148 ~ 21634354 (-) True G86723
TU102985 lncRNA upstream 312544 21794423 ~ 21796407 (-) True G86754
XM_026946769.2 mRNA downstream 14574 21444110 ~ 21456321 (-) True lmln
XM_026946913.2 mRNA downstream 29227 21426918 ~ 21441668 (-) False osbpl11
XM_026946904.2 mRNA downstream 29227 21426918 ~ 21441668 (-) True osbpl11
XM_026912892.2 mRNA downstream 57905 21396465 ~ 21412990 (-) True snx4
XM_026913087.2 mRNA downstream 78330 21385727 ~ 21392565 (-) False znf148
XM_026912513.2 mRNA upstream 351 21482230 ~ 21498144 (-) True mcm3ap
XM_026913158.2 mRNA upstream 17504 21499383 ~ 21503990 (-) True LOC113526267
XM_034304249.1 mRNA upstream 32381 21514260 ~ 21519959 (-) False LOC113526134
XM_026912945.2 mRNA upstream 32382 21514261 ~ 21519959 (-) False LOC113526134
XM_026912941.2 mRNA upstream 53410 21535289 ~ 21540087 (-) True LOC113526131
TU102794 other downstream 1714 21465166 ~ 21469181 (-) True G86592
TU102903 other downstream 11565 21457735 ~ 21459330 (-) False LOC117597354
TU102904 other downstream 11565 21457735 ~ 21459330 (-) False LOC117597354
TU102877 other downstream 165795 21299887 ~ 21305100 (-) False dhrs9
XR_004578271.1 other downstream 326274 21136046 ~ 21144621 (-) False phgdh
XR_003402729.2 other upstream 24557 21506436 ~ 21519959 (-) True LOC113526134
TU102935 other upstream 131757 21613636 ~ 21614511 (-) True G86715
XR_003402720.2 other upstream 763263 22245142 ~ 22255729 (-) False LOC113525948
TU103335 other upstream 908557 22390436 ~ 22397343 (-) True G87069
trnae-cuc_14 other upstream 1215168 22697047 ~ 22697118 (-) True trnae-cuc_14

Expression Profile