RNA id: TU102877


Basic Information

Item Value
RNA id TU102877
length 1552
RNA type TUCP
GC content 0.41
exon number 5
gene id dhrs9
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21299872 ~ 21305299 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGTCTGATGGATCAGGTCAGTCGCAAAAGAGCCCACAGGAAGGTGAAGAGAAGTGAGTGAACATTGCTGCAAATCGTAAACAGATCGTGGGGAAACAGCTCGTTTAAATAAGGACACGGTGGAACGGAGGCAAGTTCATCTGTAAAGCTCTCCCTGCAATTAAAATGTTTCTATATATCTTAGGGCTGATGGCCTTATTCTATGTCTACCAGTGGTTTAGAGAGCTGAAGCAAGTGCCAAACAAATCAGAGAAATATGTCTATATTACGGGGTGTGACACAGGCTTTGGAAACCTTCTGGCCAAACATCTGGACAAAGATGGTTTCTGTGTTATTGCTGGCTGCTACACAGAGAAAGGAGAAGTTGAGCTGAAGAAGGCCTGCTCAGCCAGACTCTCTACTGTTCAATTAAATGTTACTGATAATGATAGCATCAAGAAGGCTGCAGGCATCATTAAAACCCTGGTGGGAGACAAAGTGTGCTTGGAAGAATAACTTTATCTTCAGGACCATACTGTGTCTCAAAATATGGAGTGGAGGCTTTCAATGACTGCCTGAGGTTGAACATGATACCATTTGGAGTTAAGGTAGTGTGCATTGAACCAGGATTCTTCAAAACAAGCATGTCAAACACTAGTGTTTTACAGGACAGCTTTCAGAAATTATGGGACAGACTGCCACAAGATGTCAGGGATGACTATGGAAGTGACTACATTGATCAAGTGAAAGTAAAGCTGTCggaggagatggagaagaaGGTGGATGGAGATCTGATGAAAGCGGTGAGCTGTATGGCACATGCTGTCTCTGCTGTCCATCCTCGCACCCGCTACTCTGCCGGCTGGGACGCAAAATTCTTCTGGCTGCCTCTGTCCTACATGCCATCCTTTATCTCTGATGCCATACTATTAAAACACAGTATCAAACCTAAGGCTTTCATTTAATATGCCACATAAGTCTTGTACAGAGATTGTATTCCTTTTCTAATGTCACAAGACGTTAATCACTAAAATCtacaaaataatcaaatgtaATATTACATGTCAGTAATTCTAATACttattagtaataaataattaggATAGTTTGGTTCGAGAGTGAGACGGCACCTGAGGGGCAGAGCAGCAAGAACATAAACTGACTGGATgaaaaaatttgtaaaaattattCTTTCCTGTTAACGGGTTGTTGGTAATTATTGATTGTATCTACTAACTTACAGTATACATACAGTAATGAGACCATGTAAtcaattattttatacaaataccATTGTCATATGACTCGGAATGACATGTaaacatgactgtttatagaATCACAGTTGTGCATGTAACTAGCATTTTTCACCCCTTCAAACTAGTAGGGGTGGTGAGAATTACCTAGATAACCTATGCCATAAAGAAACCCATATGTCATAAGAAACAACCCACCTTAAACTGTCTTGAAAGTTGTTTGGAGATTACCTCCACACTTACGCCACTGGCAAGATATTATCATTGCAGAGCCTGGAGAAGATGCACGTAGATACCCAAGTAGCAGTACTGCAGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102519 lncRNA downstream 272055 21027526 ~ 21027832 (-) True G86350
XR_003404838.2 lncRNA downstream 323732 20967906 ~ 20976155 (-) False LOC113547596
TU102830 lncRNA upstream 137796 21442896 ~ 21444084 (-) True G86621
XR_004578188.1 lncRNA upstream 152633 21457733 ~ 21459404 (-) True LOC117597354
XR_004578189.1 lncRNA upstream 152633 21457733 ~ 21459082 (-) False LOC117597354
TU102902 lncRNA upstream 152635 21457735 ~ 21459330 (-) False LOC117597354
TU102905 lncRNA upstream 152635 21457735 ~ 21459330 (-) False LOC117597354
XM_026913046.2 mRNA downstream 83743 21211290 ~ 21216144 (-) True zgc:172182
XM_034304221.1 mRNA downstream 93896 21185911 ~ 21205991 (-) False col28a2a
XM_026946976.2 mRNA downstream 93896 21185911 ~ 21205991 (-) False col28a2a
XM_034304220.1 mRNA downstream 93896 21185911 ~ 21205991 (-) True col28a2a
XM_034304411.1 mRNA downstream 115953 21176879 ~ 21183934 (-) False bbs5
XM_034304826.1 mRNA upstream 36484 21341584 ~ 21344395 (-) True LOC117597436
XM_026912815.2 mRNA upstream 46269 21351369 ~ 21362958 (-) True heg1
XM_026947167.2 mRNA upstream 58398 21363498 ~ 21383099 (-) True slc12a8
XM_034304614.1 mRNA upstream 58398 21363498 ~ 21382438 (-) False slc12a8
XM_026913088.2 mRNA upstream 80627 21385727 ~ 21392565 (-) False znf148
XR_004578271.1 other downstream 155266 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other downstream 155266 21136046 ~ 21144621 (-) True phgdh
TU101958 other downstream 1062272 20226728 ~ 20237615 (-) True G85848
TU101560 other downstream 1726424 19568751 ~ 19573463 (-) False steap3
TU101475 other downstream 1812148 19481120 ~ 19487739 (-) True grb14
TU102903 other upstream 152635 21457735 ~ 21459330 (-) False LOC117597354
TU102904 other upstream 152635 21457735 ~ 21459330 (-) False LOC117597354
TU102794 other upstream 160066 21465166 ~ 21469181 (-) True G86592
XR_003402729.2 other upstream 201336 21506436 ~ 21519959 (-) True LOC113526134
TU102935 other upstream 308536 21613636 ~ 21614511 (-) True G86715

Expression Profile