RNA id: TU101475


Basic Information

Item Value
RNA id TU101475
length 5046
RNA type TUCP
GC content 0.41
exon number 3
gene id grb14
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 19443091 ~ 19494515 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCAGTATTcatgtgtgtgcgagtgtgtgtttgtgtgtgcgggtgtgtgcaCGCTGACAGAAGAGGAATGATGCGGTGGATATAAAGCTGGGCTCCATGAGTGCTATGAGTGACTCTCTGGATGAGCTAGACACTCCAGGCAGCCTCGGTGACAAAGCGGCCATATTTCGTGACGGGAAGGGCAATGTAAGCATGCTCAGTGGCGGCGACCATGCCCTAATCGCTCTGCACTCGCCCTACCAGCCGCCCGGTGCCGTGCACAACAGGACTGCCactgcagcagcagctctcTGCAGAGGGAATAGgAAATGTCGACAGGGAGAGGAGATGCAGATGAATATGGTCCAAAACCCTTTCCCAGACCTGTTTCCCTCTGAGTGTTTGTTACCCTGGACCAAAAACAGCGCAACTCAGGTAAAAAGCTTCCCTAGTCCTGAACTCACTCTTAGCACCTGTACTCCTAGACTACACATTTCATAGTTGGATTcgaaaaataatgatttaatgtcTAAAATGTTAAGGCTAAAATGATCAGTCTGACTTTAATAAAACAAGcagtactttatttattttaaatcagcCAGTTTCCCAGGATTACTTAAGTTTGCCCAGTGGCTTAGGTTTCATTTCAACTTTGAGGGTGGACACACTGCTTATAGCACCTAACCCATCATATGATTAAAGTTGTTAACTAAacattgtgtatgtgtagtggCAGTTCCAGCATACTTCACAAACCTTCCAATTAAACAAGGAATGGACATTTCAGCTGTTCTACATCAGCTGTGTATATATAGGTACATATCCAGTATAGTGCTTATCTAGGCTATACCCATGGTTCTCAAACTGGGGTCTGGGGCCTGCTAAGGGCCAGTGAAACATAGCAATAgcattttgttttacagtggtggaaatcagcTTGAATTGAGAtcaactttaataaaataaaacttttaataaaattgtctTTTGTGGGTGGAAAGTCCAGAAATTATAAAATCTCTATGGCTACATGgccaaaatacactatatggccaaaagtatgtggacagctcaccatcacagccatatgtgggccttccccaaactgttgccacaaagtttgaatcACAGTTTAGaatgtgtttggatgctgtaccattacaatttcccttcattggaactaaagggcccaaacctgttccagcatgacggtGCTCCTCTGCACCAGGCaagatccataaagacatggtttgccaaggttggtgcggaagaactcgagtggcctgcacagagccctgacctcaatcccactaaacacctttgcGATGAACTGAAAGGCCAAAATCACTCCACAGTCTAGTGGAAAGCGTTCCAAGAAAAGTGgcggttattataacagcaaagaggggactaagtctggaatgggatgttcaacaagcacatatgagtgcagtggtcaggtgtccacaaacttttggcaatatagtgcatcactgtacacatttaaatgatgTGCCTAAGATtagaatagttggattatgtttgtaaaataagtatttaatGAGGGGATCTGAAGATTTTCTTACAGTTAAAAGGATCCCTGggtgcaaaaagtttgagaaactCCTGGACTATGTCATATAACCTATGACTCCAATAGACTATTCACAATTATAACTTGGCAGTTTGGCACTGTTGGTAACTGTTATACTGTAACTCATTATATAAAACAGACCACCAGCTTTAGTGATAAAATTGATGTGTTTTTGCATCCCCACCACTGTTTTAGACTCTTGTAGTCATTTAATACAGTATTAGATATTTAGCCAACAATTGAGAAATGCAGGTGTCAGAAttgtaaagggaaaaaaagagtattCTTTGAAGTTGGTGAAAAAGGTGAAAAGCTCCTCAGATTCATTGGAGTCATACTGAACCCACAGCATCTAACAGTTTTACAGTACATACATCTTAAGCAGTTATTAACATGATATGCCAAACTTTTGGCATCCTTTTGACTGAtgattcttttttcccctcatctcATACTATGATTTGTACAACTTCCTGGTGAAAGTGAGGAACTTTCTTTGTGACTAGGATTTGTGACTAGGACTGGGACATTGGCTGTAATGGCTTGTCAGCCTTACAGCATGGGAGAGAGGAATGTTAGGTGTTTGGATTCATATCACACCAGATCAAAACACACTTTTCCAGAAGACACTGTAAAGAGTATAAAGAGAATAACTGCTCCATATGGAAGCCAGATAGGCTACAAACAATTTATTCCATTTTGAACAGATCACGGACAGCAAAGAAGACACCTAAGTAATTCTCTGATTTTTCACTATGGTTATGGGCATTATAGGCTAGCACAAGATGATAACTGACTTTGGTCCTGTCACAAATGGTGACCTATATCCTATGGCCCTTCTCCAAGTCCACACTTTCGTGATGTAGACAAAGTGACAATGTCTTGTGTGTAAAACCTCAAggtgcattaatttaaaaaaactgggCACAGCATTTGtttactcatacatacagtacacagttcCACTAGCATTATAACAGTTTCAGTCACTctcatgaataaatattaaatgaaaaataataaataatggctATTAATCATAAGCACTGACTGTATGAAGTCAGTGGCTAGCTATGCTAAGAAAGACCATAGGTTGTATCATTagtatttcctttttaaaccaAACCATGCCAGTATTTTGCAGTAACTTCTGACTGACAGTGTGTTATATTCTCACATGTACTTACTTTCCAGAAGCTGCACGTTCTGCCACAGTAGAGGTGGCTGACGGTCAATTTCACACGTGTTACAATgcacaagaataaaaaaatcaagatgAAAGCTAGttgcatatatatttaaattgtaaaactTTCAAAATATGATTGTTCAAAATTAGATTTTTGCCAGATTTTACAGCCAACAGCTATCAAAAGCGTATTTAAAAGTGAAACCATTATTTGCTTAGGATTTGTAAGTGAAGGGGACAGTTCACTCCCCTACAATCGCTGGGTGAGTTTGAGAAGGTCAAAAATTGTGATTATAGTACAATTAAAATGTGCAGCCTTAGAGAGTATTATGAAAGAAATTGTGCACCAGAAAAGCTAAAGAGGCAGAGTGGCAAAATTGTTAATTATCGTGCTATCCTGAATTAAGATACCTCCTCTCCcctctgcaacacacacacacacacacacacacacattctccacAAGCAGCCATGGAGGCTCTCAGTGAAAAGTAAACACGGTCAGTATGTCAGCTTATCTCTCcactatttacactttttttaatgccaTGGCAACCATTTTTCATTGTATTAAATTTTGTTTGCCATGTTATGCAAGCTGACGAGAGCTCTCATGCTTTCACATACAGTGTGCTGATGAACAAGACCTACACCCTATCTCTATATTTACACTGCCTCtgtgaaagtgaaaaaataaagattaccAATCTTTTATTCTTCCTGATAGTCTAGAAGTTTGCCTGTAGTCTTTGTAAATCTTTGTCACTTAGCTGGAGGGTGGTGAAAATGCCGACCTAggcttgcatgtgtgtgcatgagtgccagaaagaaaagaaaaaaacaagaaaaggcGGTATTAGTTTAGCATTGTTATTATGGCTATACAATAAAACACCTTTTAGTCATCATcacaattttcattaaattcaaCAAATCTCACCTGTGCTATTGGTGTGTCATGAGTTCCCTATTCATAGGTTTTAATTGTCTGATCAGTCTCTGATAATGCTCTGAGAATTCTGTGGTCTCTGATTCCCAAACAAAGGCAATTTGATTaaactacacaaaaaaaatgaaagctgtaTAGATAAGGTAGAAGGGTTGTTATTGATAATATTGATACCAAGTATTGTGTAACAATGCACTATACCAATAGTATtgcaaaagaaaatgataaaaataaataaaatgaaaataaataaaatgaaataattaagcAGCCAGAAACAGCAGCAGACATGGCCCAGCTGAAATTAATGATCCTGGTGCTGAGACCATGTAATACGAAGGCAAGCATTTTTCAACAGAGCTGTTCTTATATCTCCATGGCCAGTCATCCTTCTGACCCCTTATCAGATGAGCACAGGAATATGTCTATAACTGCATCTGGGAGGTTCTTCCCTGATAATGACTTACCAGTTATGTTGCCATGTTCAACTCCTCCAGTCTTGGCAGCATCTGGGCAGGGGTTAGTTCTGTCCATGCAAATTCACATGCAGCTAAAGCAAAATGTGAAAGCCATTCTGAAGATGGCTGTGGCACAACATCAGATACACTCTTCCCTATGGCACTTGTGATGGCAGGGTTTGCAATGCCACACTGACTAGTATTGGAGCAGTTCCACCAATCTATAGATGTTGATCACTCCGTAAGGGCCAATACCTCACTTCTGCTGGTGGGGAACCTGGGCCAGAACAGGGGCCTGCTGTCAAAGCCTAGTCAGGTTTATACAGGAGAGGGTGCAGGTTTCAGAATGATGAAGGCAGCATGGCCAAATGGTGCTTTTAGGGCAGCACACCCTGGACCTGTCTTCTAATGTCTATAGGGTGCCTGCCTATAGGGTGCACACTCTCAGACTTTTGATAAGTTTTTGATAGTCTCTCATCTACTCTGCAGAGAGGGCCCCAAACCGAGCCCCCCACTGACCTCAACACTTATACACATTTCCTCCTCTTCCACTGATTCCACTCTATGCAGGATTCAGCAACTAGTCCTGAGTGCTATCTGTGGCCCCACAATCAGATCTGCTGTCCCAGATGGATGGTGAGATTTGGCACCCTCATTCTGTGTCTGTGGGTCTGGCCCCTTGGACTAAATCACCCAGTGATGACTATAATCTAAAAGTTTAGGAAACACTTCTGAATTCAAGAGCCCCTTCCACATACCATGTATACCCTTAAGTAGAAACTGTTCTGTGAAAGGTGTTCAACTTATTGTCCAGTGGTCCCTGTGCACTGTCAGAGTCCTAGCATTTTAACCTATAAAGATTGCTAAACATTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101476 lncRNA downstream 2726 19464152 ~ 19478394 (-) True G85459
TU101478 lncRNA downstream 7799 19473006 ~ 19473321 (-) True G85461
TU101477 lncRNA downstream 13944 19464775 ~ 19467176 (-) True G85460
TU101381 lncRNA downstream 212168 19268662 ~ 19268952 (-) True G85382
TU101200 lncRNA downstream 428070 19051398 ~ 19053050 (-) True G85211
TU101516 lncRNA upstream 55872 19543611 ~ 19543850 (-) True G85493
TU101836 lncRNA upstream 416191 19903930 ~ 19904289 (-) True G85749
TU101854 lncRNA upstream 449168 19936907 ~ 19937123 (-) True G85767
TU101855 lncRNA upstream 449665 19937404 ~ 19937613 (-) True G85768
TU101866 lncRNA upstream 461852 19949591 ~ 19950708 (-) True G85774
XM_026913027.2 mRNA downstream 109032 19330693 ~ 19372088 (-) False fign
XM_034304786.1 mRNA downstream 109177 19330693 ~ 19371943 (-) False fign
XM_026913028.2 mRNA downstream 109536 19330693 ~ 19371584 (-) True fign
XM_026913110.2 mRNA downstream 231913 19184821 ~ 19249207 (-) False LOC113526240
XM_026913109.2 mRNA downstream 231913 19184821 ~ 19249207 (-) True LOC113526240
XM_026912404.2 mRNA upstream 9067 19496806 ~ 19536404 (-) True cobll1b
XM_026912411.2 mRNA upstream 9067 19496806 ~ 19536403 (-) False cobll1b
XM_026912416.2 mRNA upstream 9067 19496806 ~ 19535965 (-) False cobll1b
XM_034304586.1 mRNA upstream 9526 19497265 ~ 19524357 (-) False cobll1b
XM_026912423.2 mRNA upstream 9526 19497265 ~ 19524357 (-) False cobll1b
TU99754 other downstream 2441277 17028307 ~ 17039843 (-) False mettl8
TU99188 other downstream 3260254 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 4403925 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 4643727 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 4927661 14552451 ~ 14553459 (-) False med14
TU101560 other upstream 81012 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 738989 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 1648307 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 1648307 21136046 ~ 21144621 (-) True phgdh
TU102877 other upstream 1812148 21299887 ~ 21305100 (-) False dhrs9

Expression Profile