RNA id: TU99754


Basic Information

Item Value
RNA id TU99754
length 1592
RNA type TUCP
GC content 0.48
exon number 11
gene id mettl8
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17028237 ~ 17039843 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACCCCCGCTGACCTGAAGCCTAACAGCACGCAGGCGTTGGTTATTCGCGATGTTGCCGCTAGAGGGCGCACAGCACGAGAACGCTCCAAACACATGGAGGAGGATGTAGACACCATTGACACTATTTTCAACTGGAGAACAGCGCACACAGatctggagcctatcccaggattACTGGGTGCAAAGTGGGAATACAGCCGGACACAGGGAATACATGCACAGAAACCGACAATACCCTAAGCTCAGGAATGGACCAGGGACACTGGAGATTTCTCCTCATCACATGAAAGAGTGAAAATGAGAAGATTGCTGAAGATGACGGTGTCGGCTGTGGTCCGTGGTGTTGGACATGTTCCCTGCAGATGTCTCGGGGGACGACCTCCTGCACCACTCGGAGGCAGAATCCTCACCAACCCTAAGGACATCTTCCAGCATAACATGTGGGATCATGTTCAGTGGTCACCAGAGGAGATGGAAGAAGCCAGACAAAAAGCAGAGGAGAACTCCAGAGAACAGATTCCAATAGAAGAACAAGGGCTGTGACACAAGTCGTACCCCAGAAGGTCAGGAGGCTTCAGCGCCAGTATATCCTGAGTTAAGAGAAACTCAGCACAGCAGGTTGGAAAGCCAAAAGGGAGACGATCACATTCCCAACCATGATGTACTGAGAGAGAAGCAGCACACTGATTACCTTTCTGCAGTGCCCTCTCAAGAAGCTGCTGCTTTTCCTGGTCAACATGCTTCTTTCAGAATACTGGAGGTGGGCTGTGGTGCAGGCAACAGTGTATTCCCTATCATCAACGCCATCAGGGGCAGTGATGCATTCCTGTACTGCTTTGACTTTTCTTCCAGAGCAATCCAACTTGTCAAGGAGCATCCAGACTACGATCCTGCAGTGTGCCATGCATTTGTGCAAGACATTTGTGATGATGTGTCCATGTTTCCCTTTCCTCAGGAGAGTCTTGATGTTattgttgtggtgtttgtgcTCTCCTCCATTCACCCTGAGAGGATGCAAAGAGTGCTTAATCGTCTGGCAAGCTACCTGAAGCACGGAGGAACCATCCTGTTCAGAGATTATGGCAGATATGATCTGGCTCAGCTGCGATTCAAAAAAGGGCAGTGTCTGTCTGAAAATTTCTACACACGACAAGATGGAACCTGCGTATATTTCTTTATGAAAGATGAGGTCCATCGGTTGTTCACTAATGCCGGTTTGGAGGAGGTTCAGAACCTGGAAGACAGGAGACTTCAGGTGAACCGAGGAAAGAAAGTAGTGATGCATAGAGTATGGATGCAGAGCAAGTACCGAAAACCTTCCAGAGTACCGATATCCTAGACCTCTCAACACCAGGAAGCTGACCACTGGGACTGCTTATGTGGAAGCATATAAGCATATACGGACATAAAATAACCATGATGGAAATACAAACATGGATTTAGTGGTTTGTCTGTGAATTAATTCACGTCTGTCAGTGAGTGGTGTAAAAGGGGGTATTAAGTGAACTGGCCACAAGCtggaaagaaatgagaaaagtCAGTGCAAGGGGtcatttaacttatttttcAAAGTAGATACTGAATTTTACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU99680 lncRNA downstream 62134 16965511 ~ 16966173 (-) True G83953
TU99271 lncRNA downstream 618414 16409428 ~ 16409893 (-) True G83614
TU99247 lncRNA downstream 652021 16374585 ~ 16376286 (-) False si:dkey-91i10.2
XR_004578163.1 lncRNA downstream 799870 16224341 ~ 16228437 (-) True LOC117597324
TU99098 lncRNA downstream 951687 16074499 ~ 16076620 (-) False lmo7a
TU99803 lncRNA upstream 87467 17127310 ~ 17128680 (-) True G84061
TU99946 lncRNA upstream 267726 17307569 ~ 17311955 (-) True G84177
TU99953 lncRNA upstream 284202 17324045 ~ 17324878 (-) True G84182
TU99960 lncRNA upstream 292649 17332492 ~ 17346350 (-) True G84189
TU99971 lncRNA upstream 332136 17371979 ~ 17373212 (-) False sp3a
XM_026912782.2 mRNA downstream 2777 17002118 ~ 17025530 (-) True tlk1a
XM_026911738.2 mRNA downstream 353040 16617571 ~ 16675267 (-) False mylka
XM_026911743.2 mRNA downstream 353040 16617571 ~ 16675267 (-) False mylka
XM_026911731.2 mRNA downstream 353040 16617571 ~ 16675267 (-) True mylka
XM_026910878.2 mRNA downstream 414124 16562674 ~ 16614183 (-) False fmnl2a
XM_026913150.2 mRNA upstream 12214 17052057 ~ 17071808 (-) True itga6a
XM_026913152.2 mRNA upstream 13595 17053438 ~ 17071808 (-) False itga6a
XM_026913117.2 mRNA upstream 55231 17095074 ~ 17097982 (-) True dlx1a
XM_026913130.2 mRNA upstream 90147 17129990 ~ 17148675 (-) True hat1
XM_026913164.2 mRNA upstream 136838 17176681 ~ 17209898 (-) False dync1i2a
TU99188 other downstream 807441 16219964 ~ 16220866 (-) True G83554
TU98290 other downstream 1951112 15063425 ~ 15077195 (-) False dcaf6
TU98227 other downstream 2190914 14827786 ~ 14837393 (-) False ndp
TU98093 other downstream 2474848 14552451 ~ 14553459 (-) False med14
TU96948 other downstream 4300282 12713199 ~ 12728025 (-) False hspbap1
TU101475 other upstream 2441277 19481120 ~ 19487739 (-) True grb14
TU101560 other upstream 2528908 19568751 ~ 19573463 (-) False steap3
TU101958 other upstream 3186885 20226728 ~ 20237615 (-) True G85848
XR_004578271.1 other upstream 4096203 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other upstream 4096203 21136046 ~ 21144621 (-) True phgdh

Expression Profile