G84061


Basic Information

Item Value
gene id G84061
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17127310 ~ 17128680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU99803
CTGGTGAAAAATGGCTACTCTATGATAAAACTCACAAATTATTTACCATGGCGGTGCTTTTGTTCTTCTGCTGATAAGAAGCCGATCTGCAACTCATAAGCCACATATGGGCTAAAATCTCACTGGCAGCTTTCGAGTGAGCCAAGCCAATTCACATTGGACATGTTTCTGAAGCGTTCCTTGCTTTGTACTGTAATTATAGTTGGCCAGACCTCGTCTCCTATGGTTGTTCCACACAGTTGTACAATTGGGCATTAGAtttcttaataaaaatgaagccCGCTGTCATGCGGGTAGTATGTACAGAACAGCATGGATTGCATGCATGGATTGAGCTGAGGTTTGCCAGGCGCCGCAGCTAGTGTGAATTCAGGGTTACTCCTCTGCAAATTCATTTCacgcatttattcatttagtcaTTGTTTGTTTAGTAATTTGGAATGTAATACTCAgtacatattaaacatttaggACAAATTTGTTCCTTCTCACTACAAGCATGTGTCTGggtcatttaaatatttgctcATGGCTTTTTGACGTTGTTTATCCTCTTTTCTTCTGAAGACTCACAGGCTTCAAGTGCATGTGTAAGGTTGTGTGGTTCAACATGTATGGTCATTGGTCACAGTGAATAAGGGGAAATTATGGCGCTCTGGTTTAATCAATAATGGACCGTGTGCAAATGCTGTAGATATGACACTTCTTTAATGGATTTGCATTGAGAAATGAACTGCGAATTTAACACAATTATTTGTGCAacattaatttgttcatttaattttaaatgatttttaaaatatcttttagtAGTTTTATTCCAATACTGATGGTTATAacttctgtttttaattcagaGTAGCTCTAAATCGACTTAGACAAAACATTTTAGCTGTTCAGACTCATTATTCTGCTGTTTTCATTACGGAATAATTGTGATGGCTAATAAACAGACGAAGGCTCAATAGCCAAAACATTTTAGCTGTTCCTTTCCACCTAAGAAACCCATTAATCCATTTTTGCCTAAAGACTTAAACTGGCCACAcgattatgtttaaaaatagttcACATTTGGGAGTAGGCCACTTTGTGTTACTTATTGTATAACAACATATTAGTGGATTTATActaatacaattaattaatgttaaactTCTAGGGGGAAATGTTTCAAAAAGAACTTGAGCTCTCATATATCCATAGATTGGTCAATTACCAACCTAGTCTGACTTATTCACGATCAGCTTGTACTTGCTTTTGGACCAAAACCCAAAAAAAGTCAAGTTAGAAAAATTGATTGTGTAGCCAAGCCGtttgacttttttatttcttttcagatATGTTCTCAGTTAATCTCTAAGAGCtgctgga

Function

GO: NA

KEGG:

id description
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
TU99803 True 1371 lncRNA 0.36 1 17127310 17128680

Neighbor

gene id symbol gene type direction distance location
dlx1a dlx1,dlx1a,LOC107742982 coding downstream 29328 17095074 ~ 17097982 (-)
itga6a itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398 coding downstream 55502 17052057 ~ 17071808 (-)
tlk1a tlk1 coding downstream 101780 17002118 ~ 17025530 (-)
mylka LOC108266375,LOC108424386,LOC107559533 coding downstream 452043 16617571 ~ 16675267 (-)
fmnl2a fmnl2 coding downstream 513127 16562674 ~ 16614183 (-)
hat1 hat1,LOC106581768 coding upstream 1310 17129990 ~ 17148675 (-)
dync1i2a dync1i2 coding upstream 48001 17176681 ~ 17209898 (-)
ppp1r9ala LOC108266327 coding upstream 88041 17216721 ~ 17249832 (-)
cir1 cir1 coding upstream 308478 17437158 ~ 17443522 (-)
gpr155a gpr155 coding upstream 321200 17449880 ~ 17464276 (-)
G83953 NA non-coding downstream 161137 16965511 ~ 16966173 (-)
G83614 NA non-coding downstream 717417 16409428 ~ 16409893 (-)
LOC117597324 NA non-coding downstream 898873 16224341 ~ 16228437 (-)
G83474 NA non-coding downstream 1054239 16072840 ~ 16073071 (-)
G83473 NA non-coding downstream 1054626 16072397 ~ 16072684 (-)
G84177 NA non-coding upstream 178889 17307569 ~ 17311955 (-)
G84182 NA non-coding upstream 195365 17324045 ~ 17324878 (-)
G84189 LOC108266646 non-coding upstream 203812 17332492 ~ 17346350 (-)
G84227 NA non-coding upstream 263004 17391684 ~ 17391947 (-)
LOC117597450 NA non-coding upstream 278538 17407218 ~ 17431431 (-)
mettl8 mettl8 other downstream 87467 17028237 ~ 17039843 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 720832 16370227 ~ 16406478 (-)
G83554 NA other downstream 906444 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 1050690 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 1153396 15943740 ~ 15973914 (-)
sp3a sp3 other upstream 243299 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 566610 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1784707 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 2314411 19443091 ~ 19494515 (-)
steap3 steap3,dbi,LOC107560815,LOC107747240 other upstream 2440069 19568749 ~ 19586103 (-)

Expression


Co-expression Network