LOC117597324


Basic Information

Item Value
gene id LOC117597324
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16224341 ~ 16228437 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578163.1
TTTTTGTCGTATTTTTGTGGTTTTAGCTTAGATAACTCAGGTTAGCGATTAGTTCTCACAGATTTTACTGtgctgaataataaaataacagaaatattatGGAAAACTCATGGCCTGAATTATACCAGTTAAGGCTGTGAAATGTTGACCTTTTAAGCTAAACAATAATTTATATACAGCAAATATAAAACATCTACACTTCAAATTGCAGtgattttttctgattttaagACCCAGTggggcccttggcttctgggTCCATCCCTGCTACCAAGATGTCTTTCTGGCAGAAACTGGCCCTGAAGAGGACAACAATTTCCTGCATTCTGGCCATATAATCCTAGCTGGGACAGTTTTTCCAACTCTGGCCCATGGGTGGAGGCTGGATGGGTGGATGCTACACCCTGTCCCACCCTTCCCCACACACCTGCCACACCCTGTACCAACCAGGAGCAGCAAGGCCACTCTTACTGCATCCCATCTGGCCAGATGGTGCAGTTTCCAGGGACGACTGTACCAGCAGTTGACCCATATTAAGTCTCCATGCCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578163.1 True 551 lncRNA 0.44 4 16224341 16228437

Neighbor

gene id symbol gene type direction distance location
LOC113525961 LOC108424292,LOC108266955,LOC103034814,LOC105899367,LOC107705174,LOC106586357 coding downstream 124789 16098753 ~ 16099552 (-)
uchl3 uchl3,LOC107658267,LOC107668893,LOC107568837 coding downstream 139273 16079562 ~ 16085068 (-)
acod1 acod1 coding downstream 199997 16016189 ~ 16024344 (-)
zgc:152951 LOC108266837,LOC108424411,LOC103461279,LOC105936156,LOC103141471,LOC106938088,LOC106905368,LOC105893400 coding downstream 214517 15999677 ~ 16009824 (-)
vgll3 vgll3 coding downstream 276000 15945570 ~ 15948341 (-)
neb neb,LOC107725229,LOC107658288 coding upstream 65455 16293892 ~ 16349242 (-)
arl5a arl5a,LOC107555355 coding upstream 124706 16353143 ~ 16362904 (-)
kcnj3a kcnj3 coding upstream 201495 16429932 ~ 16457212 (-)
galnt13 galnt13 coding upstream 243622 16472059 ~ 16516287 (-)
fmnl2a fmnl2 coding upstream 334237 16562674 ~ 16614183 (-)
G83474 NA non-coding downstream 151270 16072840 ~ 16073071 (-)
G83473 NA non-coding downstream 151657 16072397 ~ 16072684 (-)
G83457 NA non-coding downstream 193598 16030534 ~ 16030743 (-)
G83456 NA non-coding downstream 198152 16025382 ~ 16026189 (-)
G83446 NA non-coding downstream 212134 16009956 ~ 16012207 (-)
G83614 NA non-coding upstream 180991 16409428 ~ 16409893 (-)
G83953 NA non-coding upstream 737074 16965511 ~ 16966173 (-)
G84061 NA non-coding upstream 898873 17127310 ~ 17128680 (-)
G84177 NA non-coding upstream 1079132 17307569 ~ 17311955 (-)
G84182 NA non-coding upstream 1095608 17324045 ~ 17324878 (-)
G83554 NA other downstream 3475 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 147721 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 250427 15943740 ~ 15973914 (-)
LOC117597380 NA other downstream 1109646 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 1147125 15049883 ~ 15077216 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 141790 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 799800 17028237 ~ 17039843 (-)
sp3a sp3 other upstream 1143542 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 1466853 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 2684950 18913387 ~ 18968492 (-)

Expression


Co-expression Network