Gene
RNA
| Item | Value |
|---|---|
| gene id | neb |
| gene name | neb,LOC107725229,LOC107658288 |
| gene type | coding |
| species | striped catfish (Pangasianodon hypophthalmus) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_047599.1 |
| NCBI id | CM018545.1 |
| chromosome length | 32114633 |
| location | 16293892 ~ 16349242 (-) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| symbol | description |
|---|---|
| neb | Predicted to enable actin filament binding activity. Involved in locomotion. Acts upstream of or within muscle cell development. Predicted to be active in Z disc. Is expressed in adaxial cell; heart; musculature system; pectoral fin; and somite. Used to study nemaline myopathy. Human ortholog(s) of this gene implicated in nemaline myopathy 2. Orthologous to human NEB (nebulin). |
| description |
|---|
| PREDICTED: nebulin isoform X1 |
| id | name | namespace |
|---|---|---|
| GO:0048747 | muscle fiber development | biological_process |
| GO:0003779 | actin binding | molecular_function |
| id | description |
|---|---|
| K18267 | NEB; nebulin |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_026911440.2 | True | 19900 | mRNA | 0.46 | 140 | 16293892 | 16349242 |
| XM_026911447.2 | False | 19897 | mRNA | 0.46 | 140 | 16293892 | 16349242 |
| XM_026911455.2 | False | 19179 | mRNA | 0.46 | 139 | 16294547 | 16349242 |
| XM_026911462.2 | False | 19810 | mRNA | 0.46 | 139 | 16293892 | 16349242 |
| XM_026911470.2 | False | 19807 | mRNA | 0.46 | 139 | 16293892 | 16349242 |
| XM_026911478.2 | False | 19807 | mRNA | 0.46 | 139 | 16293892 | 16349242 |
| XM_026911486.2 | False | 19807 | mRNA | 0.46 | 139 | 16293892 | 16349242 |
| XM_026911494.2 | False | 19140 | mRNA | 0.46 | 139 | 16294547 | 16349242 |
| XM_026911501.2 | False | 19795 | mRNA | 0.46 | 139 | 16293892 | 16349242 |
| XM_026911510.2 | False | 19789 | mRNA | 0.46 | 139 | 16293892 | 16349242 |
| XM_026911519.2 | False | 19678 | mRNA | 0.46 | 138 | 16293892 | 16349242 |
| XM_026911526.2 | False | 19621 | mRNA | 0.46 | 137 | 16293892 | 16349242 |
| XM_026911535.2 | False | 19528 | mRNA | 0.46 | 136 | 16293892 | 16349242 |
| XM_026911538.2 | False | 19501 | mRNA | 0.46 | 136 | 16293892 | 16349242 |
| XM_026911545.2 | False | 19423 | mRNA | 0.46 | 135 | 16293892 | 16349242 |
| XM_026911552.2 | False | 19330 | mRNA | 0.46 | 134 | 16293892 | 16349242 |
| XM_026911559.2 | False | 19171 | mRNA | 0.46 | 136 | 16293892 | 16349242 |
| XM_026911566.2 | False | 19171 | mRNA | 0.46 | 136 | 16293892 | 16349242 |
| XM_026911572.2 | False | 19171 | mRNA | 0.46 | 136 | 16293892 | 16349242 |
| XM_026911579.2 | False | 18442 | mRNA | 0.46 | 132 | 16293892 | 16349242 |
| XM_026911586.2 | False | 18442 | mRNA | 0.46 | 132 | 16293892 | 16349242 |
| XM_026911595.2 | False | 17713 | mRNA | 0.46 | 128 | 16293892 | 16349242 |
| XM_026911598.2 | False | 17713 | mRNA | 0.46 | 128 | 16293892 | 16349242 |
| XM_034304524.1 | False | 19714 | mRNA | 0.46 | 138 | 16293892 | 16349242 |
| XM_034304526.1 | False | 19684 | mRNA | 0.46 | 138 | 16293892 | 16349242 |
| XM_034304527.1 | False | 19573 | mRNA | 0.46 | 137 | 16293892 | 16349242 |
| XM_034304529.1 | False | 19516 | mRNA | 0.46 | 136 | 16293892 | 16349242 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC113525961 | LOC108424292,LOC108266955,LOC103034814,LOC105899367,LOC107705174,LOC106586357 | coding | downstream | 194340 | 16098753 ~ 16099552 (-) |
| uchl3 | uchl3,LOC107658267,LOC107668893,LOC107568837 | coding | downstream | 208824 | 16079562 ~ 16085068 (-) |
| acod1 | acod1 | coding | downstream | 269548 | 16016189 ~ 16024344 (-) |
| zgc:152951 | LOC108266837,LOC108424411,LOC103461279,LOC105936156,LOC103141471,LOC106938088,LOC106905368,LOC105893400 | coding | downstream | 284068 | 15999677 ~ 16009824 (-) |
| vgll3 | vgll3 | coding | downstream | 345551 | 15945570 ~ 15948341 (-) |
| arl5a | arl5a,LOC107555355 | coding | upstream | 3901 | 16353143 ~ 16362904 (-) |
| kcnj3a | kcnj3 | coding | upstream | 80690 | 16429932 ~ 16457212 (-) |
| galnt13 | galnt13 | coding | upstream | 122817 | 16472059 ~ 16516287 (-) |
| fmnl2a | fmnl2 | coding | upstream | 213432 | 16562674 ~ 16614183 (-) |
| mylka | LOC108266375,LOC108424386,LOC107559533 | coding | upstream | 268329 | 16617571 ~ 16675267 (-) |
| LOC117597324 | NA | non-coding | downstream | 65455 | 16224341 ~ 16228437 (-) |
| G83474 | NA | non-coding | downstream | 220821 | 16072840 ~ 16073071 (-) |
| G83473 | NA | non-coding | downstream | 221208 | 16072397 ~ 16072684 (-) |
| G83457 | NA | non-coding | downstream | 263149 | 16030534 ~ 16030743 (-) |
| G83456 | NA | non-coding | downstream | 267703 | 16025382 ~ 16026189 (-) |
| G83614 | NA | non-coding | upstream | 60186 | 16409428 ~ 16409893 (-) |
| G83953 | NA | non-coding | upstream | 616269 | 16965511 ~ 16966173 (-) |
| G84061 | NA | non-coding | upstream | 778068 | 17127310 ~ 17128680 (-) |
| G84177 | NA | non-coding | upstream | 958327 | 17307569 ~ 17311955 (-) |
| G84182 | NA | non-coding | upstream | 974803 | 17324045 ~ 17324878 (-) |
| G83554 | NA | other | downstream | 73026 | 16219964 ~ 16220866 (-) |
| lmo7a | lmo7 | other | downstream | 217272 | 16043283 ~ 16076620 (-) |
| pou1f1 | pou1f1,LOC107688653,LOC107661330,LOC107561319 | other | downstream | 319978 | 15943740 ~ 15973914 (-) |
| LOC117597380 | NA | other | downstream | 1179197 | 15106949 ~ 15114695 (-) |
| dcaf6 | dcaf6 | other | downstream | 1216676 | 15049883 ~ 15077216 (-) |
| si:dkey-91i10.2 | LOC108266132,LOC106530433,LOC107658202 | other | upstream | 20985 | 16370227 ~ 16406478 (-) |
| mettl8 | mettl8 | other | upstream | 678995 | 17028237 ~ 17039843 (-) |
| sp3a | sp3 | other | upstream | 1022737 | 17371979 ~ 17381172 (-) |
| evx2 | evx2,LOC107657379,LOC107671304 | other | upstream | 1346048 | 17695290 ~ 17699980 (-) |
| LOC113526313 | baz2b | other | upstream | 2564145 | 18913387 ~ 18968492 (-) |
