uchl3 (uchl3,LOC107658267,LOC107668893,LOC107568837)


Basic Information

Item Value
gene id uchl3
gene name uchl3,LOC107658267,LOC107668893,LOC107568837
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 16079562 ~ 16085068 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026947885.2
CCAATAAGTTGAAACCGGAAGCTTATCGTTTTTTGGTAGCATTCGCTTTACTACCATCCATATGATTACCTGTtagccattaaaaaaatctgacgCTTGGACTAAATATATCCTCGTTACATATCGAGGGGGAACTGTACTACTCTGTCGCTAAAATCAGTACCTGGGACTTTAGTTGAAATGGAAGGACAACGCTGGTTACCCCTGGAGGCTAATCCTGAAGTCATGAACCAATTTTTACGACAGTTGGGCTTAGTACCTAGCTGGCAGTTTGGAGATGTATATAGTTTGGACTCAGAGCTTCTTACGATGGTGCCAAGGCCTGTGTGTGCTGTCCTGCTCCTCTTCCCTGTCACGGAAAAGtacgAGTCATTTAGACTGGAGGAGGAAGCAAAGATTAAGGCACAGGGACAGGAAGTGTCATCAGAGGTGTACTTCATGAAACAAACTATCGGAAATGCATGTGGGACAATAGGGTTGATTCATGCAGTAGCAAATAACCAAACACATCTTGAGTTTGAGGCTGACTCACCACTGAAGGTGTTTATTATGCAGTCCTCTAAGATGAGCCCGGAGGAGAAAGCAGCCTTCCTAGAAAAAGATGAGAGTATCCGTGTAACACATGAGTCAAGTGCTCaggagggacagacagagGCTCCCAGTGTCGATGAAAAGGtggatttacattttattgccTTTGTGAATGTTGGAGGGCATTTATATGAGTTGGATGGCCGGAAACCTTTTCCAATAGTTCATGGGAAAACCACAGAGGACAGCTTCCTTGAGGATGCTGCAGAGGTCTGTAAGAAATTCATGGCTCGTGATCCCCAAGAGCTCCGCTTCACTGTTGTGGCTCTCTCCAAAGCATAAAACACTCGCCTACTTTCTGTTTACTCAAGAAGAAACTGCCAGCCATTCGCAAATGTTAGAATGTTTGCATTCTTACACAGtggattacaaaaaaaatggttatttGCTAATATTTTGCTGCAAATTTCTTTGACCTGAGGTGTcattaataatgaaacaaaagaaattgAATGTGTCCATGTACGCATTTAtaggctttttttaaattatgttcaaTTACTACTTGAATTATAACTATGCCTTTTCTGCTCTGTCCTGCATACTGACACCTAATTTAAATTAGACCAGAATTAAGTGGTGGTTTCTCTAAACACTGCAAAAGAACGAATCCTGTGTGTAAAACATGCTCCAGACAGATTCTCTTTTCATGAtgcataaaattacattaaaggtTAAGCTCTTTGTAAATGTTGACTTGTAATGATTTGTCAGATCAACATTTTCCCGATGTTGGTGTTTGCTTTTGTTAAACATTAGAAAAGCATTGCCTGGACATCTTTACAGTcttaaactgtccagtttctgtgagccaGTGCCCATGGGATCAAATTTTgaagtgttgtgcattctgagatacttttctgttcATCATGGATGTGAAGAGTGGTAGTTTGAGTttctgtagccttcctgtcagttccAACCTGTCTGGCCATTCCcctgtgactctctctctctctctctcaacaagAAAGTATTTCCACCCACAAAA
>XM_034304708.1
aggaTCCAATAAGTTGAAACCGGAAGCTTATCGTTTTTTGGTAGCATTCGCTTTACTACCATCCATATGATTACCTGTtagccattaaaaaaatctgacgCTTGGACTAAATATATCCTCGTTACATATCGAGGGGGAACTGTACTACTCTGTCGCTAAAATCAGTACCTGGGACTTTAGTTGAAATGGAAGGACAACGCTGGTTACCCCTGGAGGCTAATCCTGAAGTCATGAACCAAtacgAGTCATTTAGACTGGAGGAGGAAGCAAAGATTAAGGCACAGGGACAGGAAGTGTCATCAGAGGTGTACTTCATGAAACAAACTATCGGAAATGCATGTGGGACAATAGGGTTGATTCATGCAGTAGCAAATAACCAAACACATCTTGAGTTTGAGGCTGACTCACCACTGAAGGTGTTTATTATGCAGTCCTCTAAGATGAGCCCGGAGGAGAAAGCAGCCTTCCTAGAAAAAGATGAGAGTATCCGTGTAACACATGAGTCAAGTGCTCaggagggacagacagagGCTCCCAGTGTCGATGAAAAGGtggatttacattttattgccTTTGTGAATGTTGGAGGGCATTTATATGAGTTGGATGGCCGGAAACCTTTTCCAATAGTTCATGGGAAAACCACAGAGGACAGCTTCCTTGAGGATGCTGCAGAGGTCTGTAAGAAATTCATGGCTCGTGATCCCCAAGAGCTCCGCTTCACTGTTGTGGCTCTCTCCAAAGCATAAAACACTCGCCTACTTTCTGTTTACTCAAGAAGAAACTGCCAGCCATTCGCAAATGTTAGAATGTTTGCATTCTTACACAGtggattacaaaaaaaatggttatttGCTAATATTTTGCTGCAAATTTCTTTGACCTGAGGTGTcattaataatgaaacaaaagaaattgAATGTGTCCATGTACGCATTTAtaggctttttttaaattatgttcaaTTACTACTTGAATTATAACTATGCCTTTTCTGCTCTGTCCTGCATACTGACACCTAATTTAAATTAGACCAGAATTAAGTGGTGGTTTCTCTAAACACTGCAAAAGAACGAATCCTGTGTGTAAAACATGCTCCAGACAGATTCTCTTTTCATGAtgcataaaattacattaaaggtTAAGCTCTTTGTAAATGTTGACTTGTAATGATTTGTCAGATCAACATTTTCCCGATGTTGGTGTTTGCTTTTGTTAAACATTAGAAAAGCATTGCCTGGACATCTTTACAGTcttaaactgtccagtttctgtgagccaGTGCCCATGGGATCAAATTTTgaagtgttgtgcattctgagatacttttctgttcATCATGGATGTGAAGAGTGGTAGTTTGAGTttctgtagccttcctgtcagttccAACCTGTCTGGCCATTCCcctgtgactctctctctctctctctcaacaagAAAGTATTTCCACCCACAAAA

Function

symbol description
uchl3 Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within Notch signaling pathway and cranial skeletal system development. Predicted to be active in cytoplasm. Is expressed in notochord. Orthologous to human UCHL3 (ubiquitin C-terminal hydrolase L3).

NR:

description
ubiquitin carboxyl-terminal hydrolase isozyme L3

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K05609 UCHL3, YUH1; ubiquitin carboxyl-terminal hydrolase L3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026947885.2 True 1585 mRNA 0.41 9 16079562 16085063
XM_034304708.1 False 1461 mRNA 0.40 8 16079562 16085068

Neighbor

gene id symbol gene type direction distance location
acod1 acod1 coding downstream 55218 16016189 ~ 16024344 (-)
zgc:152951 LOC108266837,LOC108424411,LOC103461279,LOC105936156,LOC103141471,LOC106938088,LOC106905368,LOC105893400 coding downstream 69738 15999677 ~ 16009824 (-)
vgll3 vgll3 coding downstream 131221 15945570 ~ 15948341 (-)
kctd4 kctd4,LOC107688678,LOC107713709,LOC107748885 coding downstream 171131 15906927 ~ 15908431 (-)
tsc22d1 tsc22d1,LOC107713726,LOC107551985,LOC107688650,LOC108266727 coding downstream 186590 15864043 ~ 15892972 (-)
LOC113525961 LOC108424292,LOC108266955,LOC103034814,LOC105899367,LOC107705174,LOC106586357 coding upstream 13685 16098753 ~ 16099552 (-)
neb neb,LOC107725229,LOC107658288 coding upstream 208824 16293892 ~ 16349242 (-)
arl5a arl5a,LOC107555355 coding upstream 268075 16353143 ~ 16362904 (-)
kcnj3a kcnj3 coding upstream 344864 16429932 ~ 16457212 (-)
galnt13 galnt13 coding upstream 386991 16472059 ~ 16516287 (-)
G83474 NA non-coding downstream 6491 16072840 ~ 16073071 (-)
G83473 NA non-coding downstream 6878 16072397 ~ 16072684 (-)
G83457 NA non-coding downstream 48819 16030534 ~ 16030743 (-)
G83456 NA non-coding downstream 53373 16025382 ~ 16026189 (-)
G83446 NA non-coding downstream 67355 16009956 ~ 16012207 (-)
LOC117597324 NA non-coding upstream 139273 16224341 ~ 16228437 (-)
G83614 NA non-coding upstream 324360 16409428 ~ 16409893 (-)
G83953 NA non-coding upstream 880443 16965511 ~ 16966173 (-)
G84061 NA non-coding upstream 1042242 17127310 ~ 17128680 (-)
G84177 NA non-coding upstream 1222501 17307569 ~ 17311955 (-)
lmo7a lmo7 other downstream 2942 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 105648 15943740 ~ 15973914 (-)
LOC117597380 NA other downstream 964867 15106949 ~ 15114695 (-)
dcaf6 dcaf6 other downstream 1002346 15049883 ~ 15077216 (-)
ndp ndp,LOC107748154,LOC107756747,LOC107695497,LOC107595887 other downstream 1242153 14827675 ~ 14837409 (-)
G83554 NA other upstream 134896 16219964 ~ 16220866 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other upstream 285159 16370227 ~ 16406478 (-)
mettl8 mettl8 other upstream 943169 17028237 ~ 17039843 (-)
sp3a sp3 other upstream 1286911 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 1610222 17695290 ~ 17699980 (-)

Expression


Co-expression Network