tlk1a (tlk1)


Basic Information

Item Value
gene id tlk1a
gene name tlk1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 17002118 ~ 17025530 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026912782.2
agtggtgagtgtgagtgtgtgtgtataggataTGCACAGGAACATCGCCATAGTGTCTCACCGCTGCACACGGGTGACTAGTGACGCTTGTGATTTTCACCTCATTCTCTCCACCAGACGCAGTGCAGAGCCGCGTGAAGCTTTGATGAGTGTCCAAAGTAAGTGGAAGTGCTGGAAGTTTGGAGGAGGGGACGCCATCTTGGTCCCGGCTCTCCACGTCCCCAACACCACGGCTGCTTTCTCAGCAACACGGCGCGACTCTGCTTGAGGCCAAGCAAGGTGCTATGGATGAGCTGCAAAGTCTGGATCCGCGCCGGCAGGAGCTCCTGGAGGCACGTTTTATGGGCGGCATCAGCGGCAGCACAGGCAGTACTGGCAGCACCAGTGGAGGAACCAAGGCCTTAACAAACAACGAATGTTCGAATCATAGCTTTGGCAGTCTGGGATCTTCCAGCGATAAGGAGTCAGAGGGTTCTGACGTAAAAAGAGGCAGTTCTCCTGCATACTCAACCCCTGAAAAGAAACACTCTGAGTCATccagaggaagaaaaaggaaagctGAGATTCAGTCAGAGAGCAGCCAAGGGAAATCTATCGTTCGGGGAGCCAAAATTAGTGACTATTTTGATATACACGGTGGTAATGGGTCCAGTCCTGTTCGAGGGCTGCCACCAGTTATTCGCTCTCCCCAGAACTCACATTCCCACTCTGCACCAGGATCTAGTGTCAGGCAAAACAGTTCATCACCCACCAGTCTGACTTTTGGGGACCACATGATGCACCCTAAACAGTTAGCAGTAAAGAGTGTTCAGACTGAGCTAACCATGTTGAAGCTGGCTGCTCTGGAGAGCAATAAGAACCTAGACCTGGAGAAAAAGGAGGGCAGGATAGACGACTTGTTACGGGCAAACTGTGATCTCAGGAGACAAATAGATGAACAACAGAAACTACTTGAAAAGTACAAGGAACGCTTAAACAAATGCATCAGCATGAGCAAGAAACTCCTCATTGAAAAGaGCACGCAGGAGAAGCAGGCATGTAGGGAGAAGAGCATGCAGGACCGTCTGCGTTTGGGACACTTCACCACTGTAAGACACGGGGCCTCATTTACTGAGCAGTGGACAGATGGCTACGCCTTCCAGAACCTCGTCAAACAGCAGGAGTCTATAAACCAACAGAGGGAGGACATAGAGAGACAAAGGAAGTTGTTAGCCAAGAGGAAGCCTCCTTCAGCCAGTAACTCCCAAAGCCCCAGCGCCAACTCTGAGCAAAAACAGCGCAAAACCAAGGCTGTTAATGGGGCCGAGACTGACCCCTTCCTTAAACCCAGCTTACCTCAGCTattaACTATAGCCGAGTATCACGAGCAGGAGGAGATCTTCAAGCTACGTCTTGGCCATCTCAAAAAGGAGGAGGCAGAGATCCAAGCTGAGTTGGAGCGCTTGGAGAGAGTGCGGAATCTTCACATCCGAGAGCTGAAGAGAATAAACAACGAGGACAGCTCTCAGTTCAAAGACCATCCGACTCTGAATGAACGCTACTTGTTATTGCATCTGCTTGGAAGAGGGGGCTTCAGTGAAGTGTACAAGGCTTTTGACCTTATTGAACAACGTTATGCAGCTGTGAAAATCCATCAACTCAACAAAAActggagagaggagaagaaggagaactATCACAAACACGCCTGTAGAGAGTACAGAATACACAAGCAGCTGGATCATCCACGAATAGTGAAACTTTATGACTATTTCTCACTGGACACAGACACGTTTTGTACAGTCCTGGAATACTGTGAAGGCAATGATTTGGACTTCTACTTGAAACAGCACAAGCTTATGTCTGAAAAAGAAGCTCGTTCAATTGTTATGCAGATTGTTAATGCACTACGATATCTGAATGAGATCAAACCACCTATAATACACTATGACCTTAAACCAGGGAATATACTGCTAGTAGATGGAACTGCATGTGGAGAGATAAAAATCACAGACTTTGGTTTGTCTAAAATAATGGACGATGACAACTATGGAGTGGATGGGATGGACCTCACATCACAAGGGGCTGGCACTTACTGGTACTTGCCCCCCGAGTGTTTTGTTGTGGGTAAGGAACCTCCAAAGATCTCCAACAAGGTGGATGTGTGGTCTGTGGGAGTTATCTTTTTCCAGTGTCTCTATGGAAGGAAGCCTTTTGGTCATAACCAGTCCCAGCAGGATATCCTGCAGGAGAACACTATTCTCAAAGCCACCGAGGTGCAGTTCCCAGTCAAACCTGTGGCCAGCAACGAGGCCAAGGCATTTATCCGACGCTGTCTTGCATATAGGAAGGAGGACCGGTTTGATGTGCAGCAGCTGGGCAGCGATTCGTATCTGCAGCCTCACATGAGACGCTCCAGTTCCTCTGGGAACCTGGCCTCAAGTCCGGCTCCTTCAAGTGTCATCTACTGACAAACtgcactgactcactgactgaacATTGTGCTGGCCCATCTCTGCTCTCCCTGCTCTCCCTGCTGCAGGAACCGGACAGGAGCCAAGCAGGCAGGGGACAAGCATGTCCTCAGATTGTGGATGCTGGAGATCGACAGTTGAATCTGGTGTTTGGATTTGGGCAGTTTGACCAATGGAAGTGGGATAGGAAAAGATCAAACTTTCATTCAGAAAGAGAgtgttgtgtaaatgttattGAAGCATAATGGCcttttaaaaattctataaaGCACTGCTCCATCTAAGTAACTTGAAAtgtgatatttcttttttttgtggcaGTTGCTTTGAAGGAATAGATGAAGACCTGACACCtaccataaataaatgaatgcagtCTCTGCCAGGTAAAATGATTGCAATGATGAAGTGATTTTTCTGGCAGGTATTTGCTACAGGGGCTTACATGCATACAGGAAGTCTCTAAGGTTTTCAGTATAAACTTGGCAGAGATATTTTGGATTTGGGGGAGTGTTAGCTGTTTTCTGTACAATTAGCAACGAGAATGTAATTAGCATATGTTGTGACGTAGTGTCACAATAGGGCCAAGCAGAATACTAATTTTGAATGCACAAAATAACCAAATGTAGAGAAATGACAATGTACAGAATCCTTatgcaggataaaaaaaaataaagatccCTTCTAGAAAATTAATGTATATTTGCTGTACAGGACCATACTTGCAGATATTAAATTTCAACAGATTAATTctgtacaaacttttttttgccGTTTTTCTTGTAAATCTGGTTTCCTGAAGTGTTTGCTGCTTTTatgttgctttttaaaaatggctgtatTGAACTACTTTGGGTACGAAGTGTACAGTTCTGTTGAAATTTAAAATGGTAATAAATGCCAGGTAATTATTTGTTGCCTCAGATTATATACTGTTCTTCTTGAAATAGGCATCTAATACTTTAATTTTCTTGCTATGGTTTGATGTTAATGCTCATCTACTCCAATTGCCCACCTAAAGTGTCATCTGAtgccattttaaacacacagacaaggagacgaa

Function

symbol description
tlk1 Enables ATP binding activity and protein serine/threonine kinase activity. Involved in several processes, including intracellular protein transport; protein phosphorylation; and regulation of chromatin assembly or disassembly. Located in nucleoplasm.

NR:

description
PREDICTED: LOW QUALITY PROTEIN: serine/threonine-protein kinase tousled-like 1

GO: NA

KEGG:

id description
K08864 TLK; tousled-like kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026912782.2 True 3516 mRNA 0.45 23 17002118 17025530

Neighbor

gene id symbol gene type direction distance location
mylka LOC108266375,LOC108424386,LOC107559533 coding downstream 326851 16617571 ~ 16675267 (-)
fmnl2a fmnl2 coding downstream 387935 16562674 ~ 16614183 (-)
galnt13 galnt13 coding downstream 485831 16472059 ~ 16516287 (-)
kcnj3a kcnj3 coding downstream 544906 16429932 ~ 16457212 (-)
arl5a arl5a,LOC107555355 coding downstream 639214 16353143 ~ 16362904 (-)
itga6a itga6,itga6a,LOC107745248,LOC107742949,LOC107671295,LOC107657398 coding upstream 26527 17052057 ~ 17071808 (-)
dlx1a dlx1,dlx1a,LOC107742982 coding upstream 69544 17095074 ~ 17097982 (-)
hat1 hat1,LOC106581768 coding upstream 104460 17129990 ~ 17148675 (-)
dync1i2a dync1i2 coding upstream 151151 17176681 ~ 17209898 (-)
ppp1r9ala LOC108266327 coding upstream 191191 17216721 ~ 17249832 (-)
G83953 NA non-coding downstream 35945 16965511 ~ 16966173 (-)
G83614 NA non-coding downstream 592225 16409428 ~ 16409893 (-)
LOC117597324 NA non-coding downstream 773681 16224341 ~ 16228437 (-)
G83474 NA non-coding downstream 929047 16072840 ~ 16073071 (-)
G83473 NA non-coding downstream 929434 16072397 ~ 16072684 (-)
G84061 NA non-coding upstream 101780 17127310 ~ 17128680 (-)
G84177 NA non-coding upstream 282039 17307569 ~ 17311955 (-)
G84182 NA non-coding upstream 298515 17324045 ~ 17324878 (-)
G84189 LOC108266646 non-coding upstream 306962 17332492 ~ 17346350 (-)
G84227 NA non-coding upstream 366154 17391684 ~ 17391947 (-)
si:dkey-91i10.2 LOC108266132,LOC106530433,LOC107658202 other downstream 595640 16370227 ~ 16406478 (-)
G83554 NA other downstream 781252 16219964 ~ 16220866 (-)
lmo7a lmo7 other downstream 925498 16043283 ~ 16076620 (-)
pou1f1 pou1f1,LOC107688653,LOC107661330,LOC107561319 other downstream 1028204 15943740 ~ 15973914 (-)
LOC117597380 NA other downstream 1887423 15106949 ~ 15114695 (-)
mettl8 mettl8 other upstream 2707 17028237 ~ 17039843 (-)
sp3a sp3 other upstream 346449 17371979 ~ 17381172 (-)
evx2 evx2,LOC107657379,LOC107671304 other upstream 669760 17695290 ~ 17699980 (-)
LOC113526313 baz2b other upstream 1887857 18913387 ~ 18968492 (-)
grb14 grb14 other upstream 2417561 19443091 ~ 19494515 (-)

Expression


Co-expression Network