RNA id: XM_026913088.2


Basic Information

Item Value
RNA id XM_026913088.2
length 4435
RNA type mRNA
GC content 0.41
exon number 7
gene id znf148
representative False

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 21385727 ~ 21392565 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTCGCTACTAGCTTACCAGCTAGCCAGTTGCTAACCAAACAGCACAGCAGCAACGAAAACTTTTACAGGGAGATTATGGAGATTATATGCTGATCATATACGGCTACTGGCGCTGTGAAAAAGAACatttagctaacttagctagctgTAGGAAATTACCAGCAAAACAGTGCGGGAGAGGACTAATATCCAGCTGTCGAGAATACTAGCACAGGTCCATGACAATCAAGTGTTTTTCTGGAGCCACGCAGCTGCAACCAAGTAACTCAGAAAGATGAACATCGATGACAAGTTGGATGGAATCCTGATTCGATGTGGGACTGTGAACATACACCATTCGGCGCAAACCTTGGCACCCTCTGGGGTGGACAAAcggggaggaggaggaagctTGGATATGTCTCTTGGAGAAAAGAGCTTGGCCAATCAACCCCTGCTTGCCGATGATGATGAcgaggaagatgaggatgaagatcTGACTGGTGGGACGCTGACCTCGCACAACCTCATCTCACATGATGAACTTATGGTTCATGAGGAGGCCGTGAAGAACAATGCAGCGGGAGAACAAGAGTTCTCTCAGCGGCTTTCTCACAAGCTGCCGTACACTCTACACATGCCTGTGAACATTAAACAGGAACTGAAGCTGTCAGACCCACTAATTCTCAATAAAAAGGACAAGAAACAGGAGAGGGACCTTACAGAATGtcacaaaaagaagaagagaaagcaGCGGTCTCCTGCAAAGATTCTTACCATTAATGAAGATGGCTCACTGGGACATCAGAACCCAAAGTCACACATCTGTGAGCACTGCAACGCTGCTTTCAGAACAAATTACCATCTACAGAGACACGTCTTCATCCATACAGGAGAAAAGCCTTTTCAGTGCAGCCAGTGTGACATGCGTTTCATTCAAAAATACCTGTTGCAGAGACATGAGAAAATTCACACAGGAGAAAAGCCATTTCGATGTGATGAGTGTGGAATGAGATTCATCCAGAAATATCACATGGAGAGACACAAGAGGACTCACAGTGGAGAGAAGCCCTATCAGTGCGATTACTGTCACCAGtacTTCTCCAGGACTGATCGTGTCTTGAAGCATAGACGTATGTGCCATGAAAATAAGGAGAGAAAGGTCCATAAAGCAGCTGCCAAAGATGGCCTTCTACGCAGCACAGAAACAATCACATTCTCCTTCCCATCCAAGGAGAGCACTCTACCTAAGAAGAAGCGTCAGAAGTCCACTGATAAGAACAGCACCTCAGTCCAAAACACTGCTGTCACAGACAAAGTTGTGGAGGGTGGTGAGAAGAAGGAAGAGGACAGACTCGGCAAAAACGAATGTCTTCCTCTTTATGATGTTGCCACCAAGGTAAAGGATGAGTATGTAGTGACAGAATATTCTGTTGAACTCCCAGATTGTTCTCCAGAAAGCAGGCAACTTACTGGGGAGGCATCTTCTGATGAGATCACTCCTCCGAAGATAGTGCTGAAGAAGATTGCTAACAAGAAGAATGTAAAGCAGCAGCCCTTGGAACACTCGCAGCCTTTGTCACCCCTGTCATCATATGAGGAGGGAAAGGTAACAAGATATACATTTGATATTGTTGATAACAAGGGCCTATTGGATGTAGAGCCAAGCCCTGACTTGGAGACTGTTGATCCGCTCCAGGTTGGGCCCACAAAGCCACCTGGCAGCAGCACAAATTATGATGATGCCATGCAGTTTCTCAAGAAGAAGCGTTACCTCCAGGCGACCACGGCCAATAACAGTCGGGAATATGCCCTGAATGTGAACAGCATCTCCTCACAGCCCTCAGTTACTCAGGCAGCCGTGGCCACTGTCATAGATGAGACTGTTCCTGCCACAATCCTGTCGGAGACTCAGACTCTGAACGTGGAGATCAAGGCGAGCCATGAGAAGAATGTGCTCCCTGATGAAGTCCTGCAGTCGCTCCTGGATCACTACTCCAACAAGGTCAATGGACAACCAGAGATCAGCTTCAGTGTAGCAGACACAGAAGTAACGTCCAGCATCTCCATCAATTCCTCTGATGTTTCGGAGAGTAGCCCTACTGAGGCCTTGGGCACTAGCTCCCAAGCACCCACTGCGGAGAAGGCTAGTCTTCTGCAAGAGTATTCAAAGTTTCTCCAACAAGCATTGGAGAGGACCAGTCAGAATGACAGCTACCTGAACAGCCAGAGCCTAGCGTTTGTGAATGATGGTGCAAGCCTTGGTGGGCAGCCCTTATTTTCTACAGACAAACAGTTTGGTTCTCCAAGCCGGTTTAGATCAGGTATGAACTCTCCTCTGAGACTGGACAAACCTCACTTTGGTCTTTTAGTAGATTCCCAACACTCGTTCTCATTTTCAGGCGATGAAACCAACCCTTCTTCAGTGTCACCGACTGAGGACTTTCTGGAGCAGGTGTCCCCTAAAAAGACAGATGCTCAGGGCATCACTCAAACGTTTCAGATTGCCACTTTTGATCAGAACTTCCGATCTCAGTTCCAGACGTCGTCCCGGTCTGGACTGTCTTCACAATTTAGTGTTTCCAATGGACAGGTCAGCATAAGAAGTCATGGAGGAGCAGACTTTCCAGAATTCTCTcttgttaatgttactgaaaCCAGAACTCAAATGAGCTCCTCTCCAGATGCTACAAGCAGCCACACgtttggctaaaaaaaaaaaaaagctatttaatattttagtcatttaaaAGCACTTTATACTCTTGCTCTGCGAATGTAAGCAGCACCGTATTGGATGTTCATCTCATGGCAAGCATTTGAACTCCAGATGTTCTCTCTCTATTTGGTGGTTGTTTTAATCTTGCAAGGATGAGAATCATTTTAGGAAGTAGTCGTTTTTCAGCACACTCATTTAATGTCTATACATGTAAAAggcacttttctgtttttttgttgttgttgttgttgttaattcaTTCAGTTCATCTGCGCATACTGCACAGCCAGTCTCTCTAAGAGAGAATTTACTTCCTTACAGGTACATACAGATAAGCTCTTAAATTTCCAATTTAAACTCatgaattcataattttatataatgaaattatataattcTCAGATATTTTTGCACAACACTATGAAGGTAATATTAATTTCAAAGAAAAGCTCTTAAATTATAATGGAACTAGGTACATCTCTGATACATTGTTGTATTTGTAGGTACCTTGATTGAcaccttaatttttttctttgtacaaaaataatatgCCATGATCATAAGAAATACAATTAATTTAGTTTATACTGGGAGAGTATACCTCAGATACAGCATGGGGTAATTAATAAAGGTATCACAATTTAAGTGCATTCCTCAAGTTGGATTTTTCAGTAATGAAACTGATGAAGTAAGCTTAcctaaaaagtttttttttttcctgcatgtaGTGCCTTTTTTGTGTATCTgtgaaatattgaaaacataCCCTTAACTGCCTTTTTCCATCAATTTTGTGTTTAGTTTTGACCATGAACCTAAAGAAATTAATGGTTTTAAATTTAGCTAacctattatttaattatttaaccaATTTGCACTTAGAccttgtggggaaaaaatcagtACTCTTTATACCTAGGACTTTCAATCCAACTTGGCATACGAAACCCAGCTTGAATTATGGTGTTATTGGTCTTTTTTTGAAGCACCTTTTCAATTTCATTATGACAAGTATGGAACTATTTTATAGTGTCAGAGATTGATGATGTCTTTATTTGCTATGTCATTCAACTGTTTGTTTGGTAGTTAGCAAGCAAATACATGAAATTGGGAAATTACAGTTGAGTCATGTATCTTTAATCATTGTCCTTGAAATATGAACCAAAATTTGCCTTTTCTGTCTCTAAACTGACGTTCATGTATTCACTGCATTGCTTGATGAAACAAATGGTGCATGACTTTGATCTTTGGTACATTTATTTAGTATAAATAACcatatttatgttattataCATCATACATCTAACAATGAATCACTTCATCATACTGCCTTTGTTTATAATTTCTGTATGcttctatttctctttttttgaaaTGTCTTAACCAAGTCCATAATATGTAATTTATGGATGCTGGTTTTTAAAGCCTACAGGTGTGCCATGCTAAACTACAGACCAAATTGGAACTACATTGTAAAGAGATCTTTATTGTAAATCGCTGTTACTCCTCATACTTCATTTAGAAACATTCCCTCATTTGACTGTCAGATGTGTGTCTTGTttatgcgtatgtgtgtgtgtatgtatgtaagttgTACATTTAGAActgcacattttgttttatgaGTGAGAACGAGAAATTGGAGATATTTGGGATCTCTgtggatttttaaatgaatgtactCTGCATAATCCTGTTAGTTCTGGCCTCAATGAACACTGCTCATGTTACTGTT

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102519 lncRNA downstream 357895 21027526 ~ 21027832 (-) True G86350
XR_003404838.2 lncRNA downstream 409572 20967906 ~ 20976155 (-) False LOC113547596
TU102830 lncRNA upstream 50331 21442896 ~ 21444084 (-) True G86621
XR_004578188.1 lncRNA upstream 65168 21457733 ~ 21459404 (-) True LOC117597354
XR_004578189.1 lncRNA upstream 65168 21457733 ~ 21459082 (-) False LOC117597354
TU102902 lncRNA upstream 65170 21457735 ~ 21459330 (-) False LOC117597354
TU102905 lncRNA upstream 65170 21457735 ~ 21459330 (-) False LOC117597354
XM_026947167.2 mRNA downstream 2628 21363498 ~ 21383099 (-) True slc12a8
XM_034304614.1 mRNA downstream 3289 21363498 ~ 21382438 (-) False slc12a8
XM_026912815.2 mRNA downstream 22769 21351369 ~ 21362958 (-) True heg1
XM_034304826.1 mRNA downstream 41332 21341584 ~ 21344395 (-) True LOC117597436
XM_026912539.2 mRNA downstream 80428 21299872 ~ 21305299 (-) True dhrs9
XM_026912892.2 mRNA upstream 3900 21396465 ~ 21412990 (-) True snx4
XM_026946913.2 mRNA upstream 34353 21426918 ~ 21441668 (-) False osbpl11
XM_026946904.2 mRNA upstream 34353 21426918 ~ 21441668 (-) True osbpl11
XM_026946769.2 mRNA upstream 51545 21444110 ~ 21456321 (-) True lmln
XM_026912785.2 mRNA upstream 78330 21470895 ~ 21481879 (-) True lss
TU102877 other downstream 80627 21299887 ~ 21305100 (-) False dhrs9
XR_004578271.1 other downstream 241106 21136046 ~ 21144621 (-) False phgdh
XR_004578270.1 other downstream 241106 21136046 ~ 21144621 (-) True phgdh
TU101958 other downstream 1148112 20226728 ~ 20237615 (-) True G85848
TU101560 other downstream 1812264 19568751 ~ 19573463 (-) False steap3
TU102903 other upstream 65170 21457735 ~ 21459330 (-) False LOC117597354
TU102904 other upstream 65170 21457735 ~ 21459330 (-) False LOC117597354
TU102794 other upstream 72601 21465166 ~ 21469181 (-) True G86592
XR_003402729.2 other upstream 113871 21506436 ~ 21519959 (-) True LOC113526134
TU102935 other upstream 221071 21613636 ~ 21614511 (-) True G86715

Expression Profile