RNA id: XM_026927830.2


Basic Information

Item Value
RNA id XM_026927830.2
length 1531
RNA type mRNA
GC content 0.45
exon number 6
gene id LOC113534866
representative True

Chromosome Information

Item Value
chromosome id NC_047599.1
NCBI id CM018545.1
chromosome length 32114633
location 6503829 ~ 6506790 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

atggcttCTAAGTTTTCAGAAGAGGATTTCTCCTGTCCTGTGTGCTGTGAAATCTTCAAGGATCCTGTTGTTCTGCGCTGcagtcacagtgtgtgtaaagtgtgtttgcAGCAGTTCTGGGAGACCAAAGGATCCAGAGAATGTCCTGTTTGTAGGAGGAAGTCGTCTCTAGAAAACCCTCCCACAAACCTGGCCTTAAAGAACCTGTGTGAGACTTTCTTACAGGAGAGAAGTCAGAGATCTTCATCAGTGTCTGAAACAGTCTGCAGTCTGCACAGTGAGAAACTCAAACTCTTCTGTGTGGACGATCAACAgccagtgtgttttgtgtgtcagACTTCAAGAAAACACACCAACCACAAATTCTGCCCCATTGACGAGGCAGCAACAGACTGtaagGAGGAGCTCAAAACTTCACTGAAGCCCCTACAGGAGAAACTGGAGATCTTTAAAGACTGTAAACTGAACTGGAGTCAGACTGCAGAACATATAAAGATTCAGGCCCAACACACAGAGCGGCAGATTAAGGAGGAGTTTGAGAAGCTTCACCAGTTTCTACGAGATGAAGAGGCAGCCAGGATCGCTGcactgagagaggaagaggagcagaagaGTCAGATGATGAAGGAGAAGATTGAGAAGCTGAGCAGAGACATATCATCTCTTTCAGACACAATCAGAGCCATAGAAGAGGAGATGAGAGCTGAAGACGTCTCGTTCTTACAAaactACAAGGCCACAGTGAAAAGAGCTCAGTGCACACTGCAGCATCCAGAGGAGCTTTCAGGAGCACTGATCCATGTGGCAAAACATCTGTCCAACCTGAAGTTCAGAGTCTGGGAGACGATGCAGCATGCTGTCCAATATAcacCTGTATCTCTGGACCCCAACACTGTTCATCCTGAACTCATTGTATCTGATGATCTGACCAGTGTGAGACTCAGTGATGAGGAACAGAAACTTCCTGATAATCCAGAGAGATTTGATGAATATTGCTGTATCCTGGGCTCTGAGGGCTTTAACTCAGGGACACACTGCTGGGATGTTGAAGTTGGAGACTGTACACACTGGGCATTGGGTGTGATGACAGAATCTGCTCAGAGGAAGGGAGAGATATTCTCCAGAAGTGGAATCTGGTGTGTGGGGAATTATGATGGTGAATATGGAGCAGGTTCTACACCACAGCCAGTCACTCTCCTCTCAGTAGCACAGAAACTCCAGACGATCAGAGTGCAGCTGGACTgggacagaggaaagctgtcaTTCTCCGAccctctcactaacacacacatacacactttcacacacacatttactgacAAATTACTGCCATATCTAAGTGTTGGTTGTAAAGAATCTCCTCTAAAGATCCTCCCACTTCAGTGCTCTGTAAGAGTGAATCAGATCAGTTAGAGCtgatattgttttattccagttcattaatgaaatattgcagattaaaacatttatattcttTGTGAAAGTTTGTTTTTACAGAAGCACTGAACAGTTCATTGTGAAAagcttttaa

Function

GO: NA

KEGG:

id description
K12012 TRIM35; tripartite motif-containing protein 35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92383 lncRNA downstream 175744 6326099 ~ 6328085 (-) True G77840
TU92381 lncRNA downstream 179159 6323043 ~ 6324670 (-) True LOC117597343
TU92334 lncRNA downstream 213818 6289797 ~ 6290011 (-) True G77799
TU92332 lncRNA downstream 222405 6280999 ~ 6281424 (-) True G77797
XR_004578155.1 lncRNA downstream 248679 6253870 ~ 6255150 (-) True LOC117597312
XR_004578288.1 lncRNA upstream 26660 6533450 ~ 6536271 (-) True LOC117597449
TU92638 lncRNA upstream 86351 6593141 ~ 6615660 (-) True G78058
TU92799 lncRNA upstream 570631 7077421 ~ 7107392 (-) True G78172
TU92833 lncRNA upstream 678643 7185433 ~ 7185732 (-) True G78203
TU92894 lncRNA upstream 770029 7276819 ~ 7292595 (-) True G78242
XM_026927840.2 mRNA downstream 18254 6482345 ~ 6485575 (-) True LOC113534871
XM_026928040.2 mRNA downstream 72705 6408161 ~ 6431124 (-) True mcf2lb
XM_026928038.2 mRNA downstream 72933 6408161 ~ 6430896 (-) False mcf2lb
XM_034304554.1 mRNA downstream 77409 6408161 ~ 6426420 (-) False mcf2lb
XM_034304553.1 mRNA downstream 77409 6408576 ~ 6426420 (-) False mcf2lb
XM_034304923.1 mRNA upstream 21795 6528585 ~ 6532640 (-) True LOC113534867
XM_026927839.2 mRNA upstream 35643 6542433 ~ 6545942 (-) True LOC113534870
XM_026927838.2 mRNA upstream 57123 6563913 ~ 6567039 (-) True LOC113534869
XM_034304922.1 mRNA upstream 86384 6593174 ~ 6606144 (-) True LOC117597446
XM_026927836.2 mRNA upstream 86744 6593534 ~ 6596688 (-) True LOC113534868
XR_004578179.1 other downstream 179149 6323153 ~ 6324680 (-) False LOC117597343
TU92001 other downstream 1164196 5331584 ~ 5339633 (-) False LOC113534947
TU91765 other downstream 1658950 4839960 ~ 4844879 (-) True G77283
TU90967 other downstream 2687793 3813479 ~ 3816036 (-) False faima
trnas-cga other downstream 3564427 2939321 ~ 2939402 (-) True trnas-cga
TU92645 other upstream 22256 6529046 ~ 6564571 (-) False G78058
TU92652 other upstream 22256 6529046 ~ 6565037 (-) False G78058
TU92666 other upstream 37328 6544118 ~ 6545953 (-) False LOC113534870
TU92785 other upstream 536997 7043787 ~ 7046809 (-) True G78159
TU93319 other upstream 1237936 7744726 ~ 7747638 (-) True G78626

Expression Profile