RNA id: TU119413


Basic Information

Item Value
RNA id TU119413
length 213
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G100748
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17543141 ~ 17543353 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGTTCGATTTTATGATAAAGATGAAGTGATTTTGTGAAGATGTTTAGGGCTGATAAACCTCCATGGCCACAGAATAGGGGAGGACCTTTATGTAGCCTTAATGCAGGTGCCGAGTGAGAGAGGTATAGATTTGAAACAAGTAGTATCAATTACTATTGATGGAGCAGTGTCaatgattgagagagagaggggattgGAGCAGCACTTGAA

Function

GO: NA

KEGG:

id description
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119402 lncRNA downstream 49518 17493412 ~ 17493623 (-) True G100739
TU119395 lncRNA downstream 86096 17456052 ~ 17457045 (-) True G100735
TU119386 lncRNA downstream 135755 17407090 ~ 17407386 (-) True G100727
XR_003403938.2 lncRNA downstream 188380 17345629 ~ 17354761 (-) True LOC113539580
TU119311 lncRNA downstream 278732 17249178 ~ 17264409 (-) True G100663
TU119429 lncRNA upstream 55136 17598489 ~ 17602770 (-) True G100764
TU119430 lncRNA upstream 59876 17603229 ~ 17603658 (-) True G100765
TU119436 lncRNA upstream 173998 17717351 ~ 17718028 (-) True G100771
XR_004578367.1 lncRNA upstream 303672 17847025 ~ 17852060 (-) True LOC113537962
XR_003403807.2 lncRNA upstream 306287 17849640 ~ 17852060 (-) False LOC113537962
XM_034305182.1 mRNA downstream 64856 17423449 ~ 17478285 (-) False alpk3a
XM_034305181.1 mRNA downstream 64858 17422361 ~ 17478283 (-) True alpk3a
XM_034305183.1 mRNA downstream 65533 17422361 ~ 17477608 (-) False alpk3a
XM_034305549.1 mRNA downstream 437629 17088641 ~ 17105512 (-) False LOC113539712
XM_034305437.1 mRNA upstream 177192 17720545 ~ 17725320 (-) True LOC117597582
XM_034305438.1 mRNA upstream 177192 17720545 ~ 17725315 (-) False LOC117597582
XM_026932720.2 mRNA upstream 739266 18282619 ~ 18524226 (-) False rasgrf1
XM_034305502.1 mRNA upstream 739266 18282619 ~ 18524226 (-) True rasgrf1
XM_034305503.1 mRNA upstream 739266 18282619 ~ 18509549 (-) False rasgrf1
TU118530 other downstream 2188504 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 3196133 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 3754294 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 3754942 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 3755355 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 543302 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 644094 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 1807409 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 2436716 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 3410249 20953602 ~ 20966910 (-) True G102566

Expression Profile