RNA id: XM_026913303.2


Basic Information

Item Value
RNA id XM_026913303.2
length 4567
RNA type mRNA
GC content 0.42
exon number 5
gene id si:ch211-132b12.7
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 20362330 ~ 20377332 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGCTGACGCTAACTTAACCAACCTACGtcatcacacactcaaacacgTGGTACTGCTTAATTAACGCGCTCTGTTGTCTATCACCCCGAGCTAAATATCATTAACTGCACTGGGAGCTGTCGACTGCCTCGCGCCTGTCCCTGTACTCCACTCCACGTGCTCTGTTACGCAGCAATACCATTGCGTCACTCACGTCGGAGATTGGCGCATGCCTATTGGCCGCTGTGGATGTCGCTCATCAGAAGAGCCGCCCAGCACCCAGCTGAAACGAGCGGCTGCGTTAAGCACAGGCGCGCGCAACAAACCAgactgaaacaaaacacaaaacacaagaaGACATTTACAGCGCGAGCTGAGGgccAAGCCGTAGTATTCCATaagaatactgaatactgagcATTCAGTCGTTTTGCTGCTAGCTTGGTGGTGGTGCATGGGCCAACTAAAACCTGCAGAATGGAGTGAAGGAGAAACGATTGAGTGTCTTTAGAACCAAtacCCACAATGCCCCAGGAACCCAGTTGTGTGGGGAGGTGTGCTGCCCTTCCTGCCAGTAAAAATGCCAAGGACAAAAGCAACAGTGCTTCCCTGCTGTCCAGAACAAAGTTTCATACAGAGCAGGTGATGAATGGACGGAACTCCCGCTGCAGTTCTGAGAAAGACTCAGGTTATTCAGATGCTGGATCTGACTATCAGCAGACAGATGTAGATGATCAGCACAGTACTGTGACTGAGTTGAAGGGCCGTAAACCTCAGAGTACAGCAGATCAGGGGAACCACATCCTGGTATCGGGACAAGCGGAGTTCACACCCATGTTTATCAtcaaaaatgtagttttaaaacAGTCGGGACAGACAGGACAGGATCAGGTTCTCCAGTCTTTGTGGGGAACAGAGGGCACTAATTCTCAAAGTAATCTTCTGTTGCTGCAGCAGCCTGGCATCACTGTCTCTCCACTCCATgttcttacaccacagctacGAAGAGCTGAGAGCAAGAACAAAAAGGGCAAAAACACGTATCTCCCCATCCTCAACTCGTATCCCAGAATTGCTCCtaatctgaacaaaaaaaaaacagagaaacccCCAGCTAGCAGGGAGGGCAGTTCAGAGGAGCACAGCCTGAGTAAGAGAGTGTGCACTGAAGAAATTAAAGAGGTTGTGTCTGAGAAGCATCCAGACAAACAGCTGGAGAGCcacttcctgtctcactctcattctttcttACATTCACGCTCTTCCAGTGGTGACTTAGAACAGAGGAGTTCATGCCTCCCCCCTCCTGAACTAAAAATTATGGGGACATCAGCCTTCACGAGTCTTAGCTCGTCATCTGTTTCCACTTCAAAGACTTCCTCTCCATCCTTTCCATTTTCGTCTTGTTCTGAACCTGCAGCACATTTGCTCCCCACCAGTAAGGTAAGCTTTTCAGGAGGCTCAGTCCCAGACTCTACCATTGGCTTGACTCGGCACCGCCGCTTCCTCAACACAGTGGAGATACTGAGCCAGTCAGGACTGCTGGACATTACCCTAAGAACACAGGAGTTGCTCCGCCAGAGTGCTGCCACAGAGCAAAATATTGCTCAGCTGCGTCAGCATACACATCTGCTGTGCCAGGCTGTCCACGCAGGTTCCAAAGTGCCCACTTTGGAGAAAATACACAGAGTCATGGTTGAGTCTGGCTGCTATCCAAATCTCAGGAACTTGCTTTTCATGGGCAGTGATGATGGAGAGCTGGAGGCTGACAGCAACTCCAAAACTGATGCCATGATCACCTACAGATGTGGTTTTAATGGGCAGGGGGAAGTTGCACCTCCCTCCCCTCTTCTCACTATTGAGCCAGGCAGGGAAGGCAGAGATTTTCCATCAGCAGATCAGCAGGACTCAACATTTGGCATGGAATGGTTGAGGGCCCATGGGAAGCGCCCGCCTCACAAAAAGCTTCTCGTGCCTCCAGACAGCTCAACTTGTGGGGTGGCTGCTGTAGAAACTTACACAGAGTAACACTCAGTCACTGAGTCAAGTAGTGTaattataatatacacatacatacacccaTGGATTGCTCACCTAAGTCAGTGAGTGCTGGCCTTCACTGTGGAGAAACATTTTAGGTGGCATGTTTCAGCCATGGATTAATTTATGAACTGCACAGCttcatgacaagctgtttttctgttttcacagtTTATGGTATTTTAGGATATTCACAAGCACAGCATGTCCATCATTTTGTTGTCCTTTTCAGTTCAGCTTGTTTCCAGATTGTAATTTCTATCTATCcacttattataataatttcgTTACATCGACATATTAAATGGCACAATCAGGCCAGAATTGGCCATCGGGAAACTTTGCAGTGGCCTGATCTGTCTTGTGACTGGAATTGTCCTGTTCTTTGCCAAGTGGCTGGCAAATGCTGTAGTTCCTAGAAATTATGTTCTGTCCATATAGTCAAATTCAAGCACATAGCTAATTTTATCTTATTAGGCTGTATTAACCGCAGTATCACTATCTAGCAAGTAAAACCACAGCTGGCTGCATAATTATTAGACTATACAGCTgaacatatttttgttattttcaagATTGACCAAGAAAACGCACTAAAACTGAAGCCCTTTCAACAGGGCTGCAACTATGTAGCTAGCaactataatttataataaaaactgAAAGTAGTAGCCAACATTGATAGTCAGTGACTAGCTGCCTGTGTCAGAAGGTAGGCCTACACTTTCCCATCAGCCAAGTACAGGGAGCAAATTTACAGGCACAGGGAAAAcagaaagcaagcaagcaagaaatgaatgaatgaatgaatgaatgaaatgccaTGCACAAAGAAATGCCATGATCTTATTTTGTATTGTAGCTACATGTATGTGGGTCATTTATAAAATCACTTAAAATGCCCACCTATTTGTGAGACTGAATGCATCACTTTCTTTACTGTATTCATTTTCTTATTGTTAAAAGTAACACAACTCATGATTTTCTTTTGAGATACATTCACCAATCAAATCATTAGGAATCTCTTTCTAAAATAGGGTAAAACTATctgttctgagatgcttctCTGCTCACAACTTCtcaagagtggttatttgagttattggtGCCTTCCATGTCACCTTGAACCAGTTTGTCCATTCTgctttgacctctctcattaccAGTGCATTTCTGCTCACACAACTACTGCTAactgggtgttttttgtttggttatttttttgGCACCATTCAGTGTATAACAAGATCTGGAGATGGATATcaatgaaaatcccaggagatcagctgtttctgaaatactcaaaccagcctgtctggcgccatgccacagtcaaggttactgagatcacatttttcccattctgatgcttAATCTTAACCATAACTGAAGCTGTTCACCCCAgtttacatgattttatgcattaagTTGCTGCCACCTGATTAGATATTTGCgtgaatgagcagatgtacaggggttcctaataaattggtcGGTGAGTGTACATTACAGTAGGTGGTTAGTGGTCTCAAGGTTTGTTGTGGGTATATGGGGTGGTGTAAGTGGATTTGAGACTCCTGGCCTGAATTTTTGTCCCAGTCCAGCCTGAGGCACACGAGACATATATTAATTGTCTGATGGCTTCAAATGTGTTCGGTTACAATAGAAATACTACAGTAGAAAAACTGCACTGTCTGATATTTCTCtttcattagaaaaaaatccattataTGAGGTAATATATGGTATAGTTTGTGCTTTTAGCATCTGTAGTAATGTAGTGATTGCACTGTGGACTATTTGTCATCACACAATTACATGCGACTACAAATGGGTTTTATGCCTCTACATCACGATAGCCTGCTGGTGCTACATGACATCCTGTAAGTACTGGGACAAAAATCTCTTTCATACATGAACTTTCCCTTAACactaaaaaatgcaaaatgcttATGAAGGTTTTGCAGTAGAatcttttgttttgaatttgatcTTTTTCTGTAGTGTCcgtttcatttttgttttaatctattctataaacagtattaattaatgttaCTAAGGAATAATGTCTGGCTCTGTAtctgaatgttaaataatgatGTTTTTTGGTTCCCTGTGAAGTGAACTACTAGAGTTGATAACAGTTTCTGTTCCTTTGTTTAATCATGAACcatgtaataattatatatgtGAAATGTCTTAGAATGATTGGTGTTCTTTACAGTCTTGTACTCTGCATTACACTAAGGATTTTGGTCAATTGTGAGAGTTTTATGATGATACATAACccatttaatattatttctttattatatgtGTAATGATGTCTGGGAGGCTTGGTAAATGTCTTGTTTATTGCAGTTCATTGTTTAGTTATGCAAGAagtaattctttttattttctctatttggTGTTAAATCTTTATATAGTCCACTCTAAAAAATATTAGGAACAGCAAGGCccattctttgtttttgtgctaTACCCTGAGgacatttaagatttaagagatgatgatgataaaaagatgaatatgagacaat

Function

GO:

id name namespace
GO:0016706 2-oxoglutarate-dependent dioxygenase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU121267 lncRNA downstream 2789 20358215 ~ 20359541 (-) True G102434
TU121048 lncRNA downstream 5733 20282185 ~ 20356597 (-) True G102272
TU121045 lncRNA downstream 71339 20244335 ~ 20290991 (-) True G102270
TU121046 lncRNA downstream 99190 20257332 ~ 20263140 (-) True G102271
TU121000 lncRNA downstream 268528 20092984 ~ 20093802 (-) True G102225
TU121262 lncRNA upstream 18537 20395869 ~ 20414528 (-) False akt2
TU121277 lncRNA upstream 94539 20471871 ~ 20472745 (-) True G102444
TU121282 lncRNA upstream 101001 20478333 ~ 20478556 (-) True G102449
TU121286 lncRNA upstream 116925 20494257 ~ 20496301 (-) True G102453
TU121318 lncRNA upstream 201358 20578690 ~ 20581168 (-) True G102472
XM_026913745.2 mRNA downstream 70007 20215142 ~ 20292323 (-) True nectin1b
XM_026913612.2 mRNA downstream 307894 20051332 ~ 20054436 (-) True LOC113526513
XM_026913684.2 mRNA downstream 865337 19407050 ~ 19496993 (-) True pik3c2a
XM_026913687.2 mRNA downstream 865340 19407050 ~ 19496990 (-) False pik3c2a
XM_026913714.2 mRNA downstream 1028900 19309888 ~ 19333430 (-) True dhx34
XM_026913555.2 mRNA upstream 5478 20382810 ~ 20389633 (-) True ccnp
XM_026913651.2 mRNA upstream 18534 20395866 ~ 20416574 (-) True akt2
XM_026913362.2 mRNA upstream 44941 20422273 ~ 20453147 (-) False vaspb
XM_026913363.2 mRNA upstream 44941 20422273 ~ 20453147 (-) False vaspb
XM_026913361.2 mRNA upstream 44941 20422273 ~ 20453147 (-) True vaspb
XR_003402829.1 other downstream 382071 19980069 ~ 19980259 (-) True LOC113527007
XR_003402833.1 other downstream 1011387 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 2165524 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 2275359 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 5007693 15347166 ~ 15354637 (-) True tmem170a
TU121422 other upstream 576270 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 618009 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 1857371 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 3213613 23590945 ~ 23610448 (-) True mmp23bb
TU123617 other upstream 4246184 24623516 ~ 24711368 (-) True G104473

Expression Profile