RNA id: XM_034305438.1


Basic Information

Item Value
RNA id XM_034305438.1
length 4144
RNA type mRNA
GC content 0.40
exon number 2
gene id LOC117597582
representative False

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 17720545 ~ 17725320 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCAACGTGCAGCATCGGCTTCAGTTCAGCACGCAAACAGTCTTTGCCTTGGAGAAGGATATGCCTATTAAAGAAGAGTCGAACCGTCAGCTGATGTCCGTCTGTTTATTataccaaaaaagaaaaacacacaacgcAGACAACAGCAGTTACACGTGGTGCCGTGACCATTCCGGATCATCAGATCAGCGCTTCGCAGATCGCCGTGGTTGCGTGACGGCTCGCCTGCTTCGCCGGTCTTCTCTCCCGGGTTTTCTTCATCGCCATCGCTCGCAGAGGCCCTGTGCTCGCGCAGAAGGAGGGCGCGTGTGTGGGATGAACAGCGTGTGACATCGCGGAACAAACTGTTGCATGTTAAAGGACCGGTAAAGAGTTTCATTGACTTCCTGATCGAcgacttttttttctctcttctccgAAGAACTTTCATTCATCGTTGATGCGTATTAATAGAGAGAGACTTTGTGATAAGGACCGCGGGACGCTTCAGTGACCTTCGAGCATCGTATCCTTTATCTGAACAGTATATTATGATTGTTAAAATGACTGTTGATgcgttttaaaaaaagaaacggTGATTGACTTTGAgtgagaaatattttattttattttcgtCGAAAAGAGACAAGAAACTTTTCTCATTGAACTGTGTTCATCCTAATATTTAACTGAGTTGGTTTGATTTCAAATTTCCCAGGATCTTATATGAACTATATATGAACATTTGTGAATTGTTTAAGGTTTTGCTGGTTGAGGCATATTAATTTGTGggaatttttcatattttttgtgCTTTCACTTTACAGTTGAAACATGTTTGAGGATACTAGCCAAGACAATTTCAGCCCTGTGAAACAATCTAATGTCACTTTTCCAATGGGCCTGAAATTTATCACAATGAGGGTGTCTGAAATTACATCTCAATGTTATGGGAGAGGTAGAGCTAATGTGGGTCTTGACCATATGCACACAGTCGATTCAGCGATCGGTGCTTCTGTAGGCCCAACAGCTAGCTCCACCACAATCACACGCCCAGATACTGAACGTGTCATTTCTCCTGAGGCATTAGGGAGCATAATTTCAGATTTGGCTCAGAAAATAGGGGAGAGTATTTCAGCCAGCCTTAACCTTGCGCACCAGCCCAGCCTAGTACAGCCTAATCCTCATTGCCAGTCTCAACACTCCAGTGTGTATTGATACATCTAGTCTGAAGGTGATAGTTCAGCAAGATTAAGCACCTCCGCCATTCTTCAGGGGCGATAAGAGTGATTCATGTACTGTCCATGAATGGGAGGATATGATGTGCAGTTATTTAGACAGAATGAAATGCAAAACACAAACTGATGTTTCTGATCTTATCATGAGCAGACTGGCTGGAAAAGCGAGAGATGTTGTTAAGGTGTCCCTGCGAAGCCGCCCTGAACTGAGTGCCAGTGAGCTTCCAAGTGCTGTGTTTGACATACTGAAACGCAACTTCATTGAGTTGGCTTACTCAAATATGCCTATGGCTGACTTCTATAATACTGTCCCAAGAGCAGATAAAAGTCCCATGGTTTACTGGATTCGACTTAACAAGGCCATAGATGTTGCTGTTGAGTGCTTGCACAGACATAATAAGAGCGTCGAGGATCCCGCTGCTGAAGCTGTCATGATGTTTGTTTCACATTGTCCAGACCCAAGTCTTGCTATGTCTTTTCAGTTTAAACCAGCTGAGAAGTGGAGCACCGCTGAGGTCCAGGAGCGGTTGGATAGTCATCAGAGGGATCTAAAGAGAGTCTCTTTGAGGACACAGCACACAACGTCTTTGCCAGCTTGCAACGAGTGCACCGTTACGGCATGCCCCAATTCTGTGTCCAGTTCTCCTCAGCAGCCTGCTCCCGTGCCAGCCCAGTCACTGACTCCTGTAAATCATCTTAATCCTAATGCTGTTCCATTCTCTCCAGACACCAGTCTTCGACACATAGTTGGCATGATGGATCGAGTCCTGTCATTGTGCACTGCCTCTGTCACTTCATCCAATCAGTTTCATGCAGGCAAAACTTCAGACTTCAAAACCAACTTAGGCTCTGtatgtagggtctgtagatccAAGGAACACACTACGTACTCACATTGTAGACGTCCGAGGCTATGTCGTCACTGTCTCAGTTCTGGCCACTCTAAGTGTGACTGTCCTAAAGCAGCATGCCCTGCCTTGGATACTGCTCAGTTAAACTGAATAGCCCATGTGATGAGAGGGGTAACATGGGCAATTTTGATAAAACCTCCCTCACAGGTTGAAAATAGGCAGACACAGGATAATGTGAGgcgtgcattatttttgttcgAGAGCATGAGCAAAAAGAATTTCAAATCCCTGGCAATTAGCCTTGATGTGGAAAAAGCGTTCGATTCAGTGTGATGGGAGTATTTGTATTTGGTATTGCAATGCTTTGGCTTTAATGAAGAGGTTATAAGAAGTCTTAAACTGCTATATCATTTACCAACAGccatgattaaaataaatggcAATGTCTCTAACTCAATTACACTGGAGCGAGGATGTTGTCAGGGATGCCCCCTGAGTCCCACGCTTTTTGCACTATTCATAAAGCCATTAGCTCAAGCAATTAGAGAAGATACAGAAATTCTAGGAATTCCAATAAAAGAAATTGAATACAAAATATGCCTGTATGCAGACAACATTCTTATGACTATTTCTTAGCCAGACTCCTGTTTACCTAAACTCATGTCTTGTCTTGAGCAGTTTGGTTGGTATTCAGGATATAAactaaatttacacaaaaccCAAACCCTCTCTTTTAATTATTCACCACAGGAAAATATacgtaataaatataattttaaatggaaaacaaataatattaaatatctgGGGGTTATTATACCAAAGAATCTGGCTAAAATTTATACTACTAATTATGCTTCTATTACGAAGGAACTGAAAGCAGACTAGGACAGTTGGATACCCATAACCTTTAGTTTGTATGATCAAATAGAAATTATAAGGATGAATGTTTTACTGcgattattgtttttctttcaattacTACCTTTAGGGATaccaaaaaaacaatttaatgacTGGAACCGAATGATCTCAAGATTTATATGGAAAAATCAGAAACCCAGGGTCAGACTTAAAACACTACAATTACCAAAGAAAAAGGGAGGATTGTCTCTTCCCTGTTTGGAGGACTATTATACAGCAGCACAATTAAAATATCTAGTCTGCTGGTGCATTAACGATTATGAGGCAAAATGGAAAGAATTAGAATTTAACCAACTAGACTTTCCTCTCCCTTCCTTATTAGGGGATAAAACTGCTAagattatgtatatattatattatattaagcAATTGGACATTGGTCCCTCTTAATATTTGGTTCAAAGAATGCAAAATTTTGAAGCTGGAGAGACAAGCACGGCTGTTAAGATGGGTGGCAtatgatagagacttcaaaacTGCACAGATCGATGTGCGGTTTAAACAATGGATATGGAACGACATTACATCATATTGTACAGTTTCATCCAAGATCAACATTTTTGCTGAAGCATATAAACGTGCCTCTGTATGCATACAGTCCTCCAAGTCTCACTCTACCttatatattaaagaaaaatgggaGAAGGAGGCCAATATAATTTTAACAGAAGAAGATTGGTTAAACATATGTAAATCACAGCATGCTACCTCCAGTTCTGGTCAGTGGAGAGAATTCTCATGGAAAAATATCATTAGATTTTTTATTACtccaaaaagaaaatatttacagaatgGTAATCCAGAATCTGCACTTTGCTGGAGACGTAACAACTCgatggttgattattttcatatattctGGAACTGTCCAGCAATCCAGTCTTACTGGTTATTGGTAGTCACGGAAATAGAATTAATACTGGGTTTTGAGATTGATTATAGCTTTGGTACTATATATTTAGGAAACATACCAACTGATTTTAATGCTCAAGACAAGTATCTTCTCAGATTGCTGCTGGTTGCTAGTAAAAAAGCAATAACCAAGAAATGGCTGGATGAGAATCCACCAACAAAAGAAGAGTGAATAGCAATTGTAAAGGATACATTTGATATGAAGAAAATGACCTTCTCTTTAAGTGTAATACATAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU119436 lncRNA downstream 2517 17717351 ~ 17718028 (-) True G100771
TU119430 lncRNA downstream 116887 17603229 ~ 17603658 (-) True G100765
TU119429 lncRNA downstream 117775 17598489 ~ 17602770 (-) True G100764
TU119413 lncRNA downstream 177192 17543141 ~ 17543353 (-) True G100748
TU119402 lncRNA downstream 226922 17493412 ~ 17493623 (-) True G100739
XR_004578367.1 lncRNA upstream 121710 17847025 ~ 17852060 (-) True LOC113537962
XR_003403807.2 lncRNA upstream 124325 17849640 ~ 17852060 (-) False LOC113537962
XR_004578371.1 lncRNA upstream 438684 18163999 ~ 18167769 (-) False LOC117597605
XR_004578369.1 lncRNA upstream 438684 18163999 ~ 18167769 (-) True LOC117597605
TU120068 lncRNA upstream 800170 18525485 ~ 18528714 (-) True G101383
XM_034305182.1 mRNA downstream 242260 17423449 ~ 17478285 (-) False alpk3a
XM_034305181.1 mRNA downstream 242262 17422361 ~ 17478283 (-) True alpk3a
XM_034305183.1 mRNA downstream 242937 17422361 ~ 17477608 (-) False alpk3a
XM_034305549.1 mRNA downstream 615033 17088641 ~ 17105512 (-) False LOC113539712
XM_026932720.2 mRNA upstream 557304 18282619 ~ 18524226 (-) False rasgrf1
XM_034305502.1 mRNA upstream 557304 18282619 ~ 18524226 (-) True rasgrf1
XM_034305503.1 mRNA upstream 557304 18282619 ~ 18509549 (-) False rasgrf1
XM_034305505.1 mRNA upstream 557304 18282619 ~ 18509400 (-) False rasgrf1
XM_034305504.1 mRNA upstream 557304 18282619 ~ 18486829 (-) False rasgrf1
TU118530 other downstream 2365908 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 3373537 14335936 ~ 14347008 (-) False dennd11
XR_003403533.2 other downstream 3931698 13788751 ~ 13788847 (-) True LOC113534839
XR_003403534.1 other downstream 3932346 13788102 ~ 13788199 (-) True LOC113534840
XR_003403537.1 other downstream 3932759 13787657 ~ 13787786 (-) True LOC113534844
XR_004578368.1 other upstream 361340 18086655 ~ 18086971 (-) True LOC117597604
TU119855 other upstream 462132 18187447 ~ 18196806 (-) True G101178
XR_003402833.1 other upstream 1625447 19350762 ~ 19350943 (-) True LOC113527011
XR_003402829.1 other upstream 2254754 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 3228287 20953602 ~ 20966910 (-) True G102566

Expression Profile