RNA id: XR_003402812.2


Basic Information

Item Value
RNA id XR_003402812.2
length 2363
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id LOC113526834
representative True

Chromosome Information

Item Value
chromosome id NC_047600.1
NCBI id CM018546.1
chromosome length 31307711
location 19514799 ~ 19517762 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tataaactGCAGCGAGCCAGCTAAATTGGAACTAAAAATATTGGAGTGAAATTTCCTCAAAAAATGTGTGGTAACAATTGCCACACAAAAGATCTTAGTAAATGTATCTAAGTATAGTTTAAGTAAGGTTTACATGGCACCGATGATTATTCTCCTaaaaaaaaatcacagatttgtttttgtcatatttactgaaccactgaatcatttttttcagtgtggtacTTAGTTTTTGTAAGTAGTTTTTGCAGTCAATACATGTCTTGAAGCCAGGCTTAATTCTGCTGAATCCTCTTGGCTTGGATGCAAACTAATTTCATTAgagtatatatgaatatatccATGTGCATGTAAGAGATCTCAACATATAGgccttttttttgtatgttaaaTGCATTTCAAATATATTGTTTTTCAGTACAAAATGCTTTCCAAACAGGAGTACCTGTCCTGTCATTTAAAGATCTCTTCATAAACCATGTCTGGAACCCTAGGGTTCCATAAACACGACTTCTAACTCAGAACCAAGAAATTTcacatttaacattaatttttttttctttttcttttctttttttttttttacagacaaaCTTTATCTGGTTGCAAAAACACCTGTCTACGGTTGTCTCAACCTCAATCTATTATGCGGGAAGTCAGTCTAGGGAAAATATGATAGTCAATACTACTCCAGAGTTAAATAGTTGATAGGTTACCAAAGAGTAGTTGATAGTTGATAAGTGTGCCAAACTACTAAACTGTAGTTAATATACAGATCTCAAGTTATTTCTAACTTATAGCATACAAACATACATTGTCTGCAGTAACTCATTTTGTTACATTACACTTAAAGTTATGATACAAATGCCTTATAGAAGCTATGTTAAATCTGTGTGTATAATCCATTAGCCACAATATGGTTTTAAAAAGACCATTTAGTAAACAGTAATCTTTCcaataattcataaaatatggAAAGAATGTGGGAGATTGCCAAATTCTCTAGCCAGGATTTCctcattattaataatttcagTGCTTTGTTCTAACCATTTATGTTAGAACATAATGCTATCGAGGATGCCCACCATTTCCTGTAGCTTGGAGACAGCAAACAAAGGGGATGTACAGGAAATGTGCACAGAGCAACGTTCTACTCCCCTTGCTTTGCTTTTCTGCTGTATCATCATTAACTGGATTTCTCCAGATGGCTGTGCATGATAATACAATGCCATTTGAGAAACTGTATGGtgtttaaaaagtatatatagTAGAGAGCGTGAGGATGGCCAACCTGAGGgcacagagcagtatcagcgagTGGGGTCATTAAAGAAAGCACAAGGTTCCATAAGTTGTGCACCAAAAAATACAGTGAGTGTGCTGAAAAACTTCTGCATGTGAGAGCATTTCAGTTTGGCAAGCTCTGAGATATTCACACTTCCATTCCACTGACTCACCAGGGTCTACACTTTGCTTGCATCCCCAATACGCTAATAAATTTTTTCCAGTCCCTTCACTTCTCAACtcatacagtgccttgcataaataCTCACCCCATATTACAGTATGGAATTCACAATGActtaatttgtatatttacCATTTGAATTACATAATATGTCTAATATTTGAAGGTgcaagtatttattttttttattgtgacaaaagggtttattaaacaaaaagagGACATTTGCTAGTTGCATAAGCCTACACCCCCTGGGTCAATAACTGGAAGAACCACCTTTGGCAGCAAGTCATCcagttaaattttattaaattttatatacactGACAACACACCAAAGGACTTCATCAagggaaaaagtggaagattTCAGGCTTGCCAAGTCAATCACTAGACCttaatccaattgagcatgcatttcacatcctgaagaggagactgaagggagaaaccccccaaaacaaacaacaaccgAAAGAAGCCGTGATACAAGTCTGGAAAAGCATCAAAAAAGAAGAGTGTAGCAGTTTGGTGACGTCAGTGGGTCGTctgcttgatgcagttattgcaagcaatggatatgcaaccaaatatgaAGTGTTATTGAATTTAAGACtaccaatacttttgctcacctaaaatctGGGTGGTCTgtcaccaaaggtgccatgttctaagttgtttaatacatctagatgtgaaTAACAGTAAaaggaaagctgaaattctgatctatcatttcatattcatcttttgatctcaaacgcaaatgtctttaatgtatagcaagaacaaaagaattagccttgccattccagtacttACAGAGGGGTCTGTacatgtgtatctgtgtatctgagTTGGAGCACTAATAAactaatattgtaatata

Function

GO:

id name namespace
GO:0008144 drug binding molecular_function
GO:0019825 oxygen binding molecular_function
GO:0036094 small molecule binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU120665 lncRNA downstream 23544 19490529 ~ 19491255 (-) True G101938
TU120659 lncRNA downstream 119495 19395071 ~ 19395304 (-) True G101932
TU120585 lncRNA downstream 150990 19362572 ~ 19363809 (-) True LOC113526920
XR_003402820.2 lncRNA downstream 150999 19362688 ~ 19363800 (-) False LOC113526920
TU120579 lncRNA downstream 153791 19360792 ~ 19361008 (-) True G101865
TU120685 lncRNA upstream 67878 19585640 ~ 19585839 (-) True G101955
TU120832 lncRNA upstream 336768 19854530 ~ 19854763 (-) True G102082
TU120887 lncRNA upstream 425949 19943711 ~ 19967777 (-) True G102129
TU120906 lncRNA upstream 481201 19998963 ~ 19999181 (-) True G102146
TU120907 lncRNA upstream 482339 20000101 ~ 20000323 (-) True G102147
XM_026913684.2 mRNA downstream 17806 19407050 ~ 19496993 (-) True pik3c2a
XM_026913687.2 mRNA downstream 17809 19407050 ~ 19496990 (-) False pik3c2a
XM_026913714.2 mRNA downstream 181369 19309888 ~ 19333430 (-) True dhx34
XM_026932413.2 mRNA downstream 773075 18734427 ~ 18741724 (-) False znf710a
XM_026913612.2 mRNA upstream 533570 20051332 ~ 20054436 (-) True LOC113526513
XM_026913745.2 mRNA upstream 697380 20215142 ~ 20292323 (-) True nectin1b
XM_026913303.2 mRNA upstream 844568 20362330 ~ 20377332 (-) True si:ch211-132b12.7
XM_026913555.2 mRNA upstream 865048 20382810 ~ 20389633 (-) True ccnp
XM_026913651.2 mRNA upstream 878104 20395866 ~ 20416574 (-) True akt2
XR_003402833.1 other downstream 163856 19350762 ~ 19350943 (-) True LOC113527011
TU119855 other downstream 1317993 18187447 ~ 18196806 (-) True G101178
XR_004578368.1 other downstream 1427828 18086655 ~ 18086971 (-) True LOC117597604
TU118530 other downstream 4160162 15347166 ~ 15354637 (-) True tmem170a
XR_003403523.2 other downstream 5167791 14335936 ~ 14347008 (-) False dennd11
XR_003402829.1 other upstream 462307 19980069 ~ 19980259 (-) True LOC113527007
TU121422 other upstream 1435840 20953602 ~ 20966910 (-) True G102566
XR_004578325.1 other upstream 1477579 20995341 ~ 21013100 (-) False sertad3
XR_004578321.1 other upstream 2716941 22234703 ~ 22306769 (-) False si
XR_004578330.1 other upstream 4073183 23590945 ~ 23610448 (-) True mmp23bb

Expression Profile