RNA id: trnaq-uug_6


Basic Information

Item Value
RNA id trnaq-uug_6
length 72
RNA type tRNA
GC content 0.44
exon number 1
gene id trnaq-uug_6
representative True

Chromosome Information

Item Value
chromosome id NC_047605.1
NCBI id CM018551.1
chromosome length 26640196
location 23946992 ~ 23947063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTCCATGGTGTAATGGTTAGCACTCTGGACTTTGAATCCAGTGatctgagttcaaatctcagtgGAACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU221202 lncRNA upstream 119090 23826676 ~ 23827902 (+) True G186882
TU221186 lncRNA upstream 146030 23795730 ~ 23800962 (+) True G186868
TU221181 lncRNA upstream 154865 23791920 ~ 23792127 (+) True G186864
TU221123 lncRNA upstream 232621 23712033 ~ 23714371 (+) True G186814
TU221099 lncRNA upstream 270424 23671984 ~ 23676568 (+) False G186798
TU221284 lncRNA downstream 206052 24153115 ~ 24203702 (+) True G186949
TU221288 lncRNA downstream 208717 24155780 ~ 24162236 (+) True G186951
TU221282 lncRNA downstream 209539 24156602 ~ 24203702 (+) False G186949
TU221283 lncRNA downstream 210059 24157122 ~ 24203702 (+) False G186949
TU221319 lncRNA downstream 214205 24161268 ~ 24186454 (+) True G186976
XM_034308759.1 mRNA upstream 20848 23835703 ~ 23926144 (+) True dennd1b
XM_026912969.2 mRNA upstream 473423 23413029 ~ 23473569 (+) False LOC113526144
XM_026917310.2 mRNA downstream 31810 23978873 ~ 24003792 (+) True aspm
XM_026917314.2 mRNA downstream 31810 23978873 ~ 24003792 (+) False aspm
XM_026913018.2 mRNA downstream 170755 24117818 ~ 24138641 (+) True b3galt2
XM_026912863.2 mRNA downstream 170755 24117818 ~ 24138641 (+) False b3galt2
XM_026912944.2 mRNA downstream 170755 24117818 ~ 24138641 (+) False b3galt2
trnaq-uug_5 other upstream 8104 23938817 ~ 23938888 (+) True trnaq-uug_5
trnaq-cug_12 other upstream 8612 23938309 ~ 23938380 (+) True trnaq-cug_12
trnaq-uug_4 other upstream 9904 23937017 ~ 23937088 (+) True trnaq-uug_4
trnaq-uug_3 other upstream 12286 23934635 ~ 23934706 (+) True trnaq-uug_3
trnaq-cug_11 other upstream 12789 23934132 ~ 23934203 (+) True trnaq-cug_11
TU221326 other downstream 260830 24207893 ~ 24210725 (+) True glrx2
TU221328 other downstream 260830 24207893 ~ 24210725 (+) False glrx2
trnar-acg_9 other downstream 1559360 25506423 ~ 25506495 (+) True trnar-acg_9
TU222375 other downstream 1584682 25531745 ~ 25593503 (+) False LOC113523924
TU222713 other downstream 2238799 26185862 ~ 26212109 (+) False polr2l