RNA id: TU26421


Basic Information

Item Value
RNA id TU26421
length 494
RNA type TUCP
GC content 0.48
exon number 3
gene id romo1
representative False

Chromosome Information

Item Value
chromosome id NC_047596.1
NCBI id CM018542.1
chromosome length 35203048
location 5532037 ~ 5536060 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ctctgctctgcctGTAGGAGGCGCTGGTCTCCTCTTACTGCTTCCTGTTGCGTAATGGTGTCTTTCTGAAAGGGCTAGCATcgacaacacacacaacacgcagCTGTACAAACTGCGAGCCTCGAATCACCTTTTAAAACGCTTCTTGGAAATACTCGATCAGTTATTTGGGAAAGACCTGCCCAGAGTACAAATGCCTGTAGCTGTAGGACCGTATGGACAGGCACAGCCAAACTGTTTCGACAGAGTCAAGATGGGCTTCATGATGGGCTTCGCAGTCGGAATGGCCGCTGGTGCCATGTTTGGAACTTTCTCATGCCTACGAATTGGGATGAGAGGTCGAGAGCTGATGAGTGGAGTAGGAAAGACCATGATGCAAAGTGGGGGCACATTTGGAACCTTCATGGCCATTGGCATGGGCATTCGCTGCTGACTGCGCTGTTCACTTTATTTCACTCTAAATTCCTTTCATATATTCATAATGCCATAAAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU26423 lncRNA downstream 59357 5474557 ~ 5474767 (-) True G22156
TU26253 lncRNA downstream 120058 5406935 ~ 5414066 (-) False LOC113533127
TU26201 lncRNA downstream 202986 5330826 ~ 5331138 (-) True G21975
TU26189 lncRNA downstream 208601 5325159 ~ 5325523 (-) True G21963
TU26186 lncRNA downstream 266081 5267485 ~ 5268043 (-) True G21960
TU26461 lncRNA upstream 115815 5651875 ~ 5652106 (-) True G22186
TU26463 lncRNA upstream 121384 5657444 ~ 5657651 (-) True G22188
TU26456 lncRNA upstream 144061 5680121 ~ 5680482 (-) True G22182
TU26478 lncRNA upstream 154627 5690687 ~ 5691117 (-) True G22203
TU26476 lncRNA upstream 165557 5701617 ~ 5702754 (-) True G22201
XM_026924555.2 mRNA downstream 13771 5508012 ~ 5520353 (-) True LOC113532874
XM_034313028.1 mRNA downstream 70998 5437548 ~ 5463126 (-) True ahcy
XM_026922887.2 mRNA downstream 109004 5422202 ~ 5425120 (-) True dtd1
XM_026925059.2 mRNA downstream 120038 5405967 ~ 5414086 (-) True LOC113533127
XM_026942818.2 mRNA downstream 140607 5346109 ~ 5393517 (-) True atg3
XM_026924211.2 mRNA upstream 58049 5594109 ~ 5631257 (-) True mtss1
XM_026924219.2 mRNA upstream 58049 5594109 ~ 5631255 (-) False mtss1
XM_026917461.2 mRNA upstream 102536 5638596 ~ 5651285 (-) False osgn1
XM_026917446.2 mRNA upstream 102536 5638596 ~ 5650765 (-) True osgn1
XM_026917453.2 mRNA upstream 102536 5638596 ~ 5647769 (-) False osgn1
XR_003403147.2 other downstream 332912 5111462 ~ 5201212 (-) False LOC113530384
XR_003403149.2 other downstream 332912 5111462 ~ 5201212 (-) False LOC113530384
XR_003403146.2 other downstream 332912 5111462 ~ 5201212 (-) True LOC113530384
XR_003403148.2 other downstream 332912 5111463 ~ 5201212 (-) False LOC113530384
XR_003404667.2 other downstream 632113 4821379 ~ 4902011 (-) False obsl1a
XR_004577391.1 other upstream 537975 6074035 ~ 6076877 (-) False LOC117596222
TU26888 other upstream 943342 6479402 ~ 6480011 (-) True G22591
XR_004580309.1 other upstream 2726559 8262619 ~ 8265229 (-) False mitfa
TU28034 other upstream 2944991 8481051 ~ 8484029 (-) False tcta
TU28035 other upstream 2944991 8481051 ~ 8484181 (-) False tcta

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064448 True 954 mRNA 0.41 3 NC_007117.7 50401620 ~ 50404732 (-)
grasscarp (Ctenopharyngodon idella) TU567552 True 1228 lncRNA 0.40 3 CI01000340 14754883 ~ 14756719 (-)