Gene
RNA
| Item | Value |
|---|---|
| RNA id | XM_026920505.2 |
| length | 1511 |
| RNA type | mRNA |
| GC content | 0.48 |
| exon number | 10 |
| gene id | pacsin1b |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_047596.1 |
| NCBI id | CM018542.1 |
| chromosome length | 35203048 |
| location | 9473539 ~ 9500167 (+) |
| genome version | GENO_Phyp_1.0_2019_striped_catfish_Genome |
| species | striped catfish (Pangasianodon hypophthalmus) |
| id | name | namespace |
|---|---|---|
| GO:0006897 | endocytosis | biological_process |
| GO:0060088 | auditory receptor cell stereocilium organization | biological_process |
| GO:0097320 | plasma membrane tubulation | biological_process |
| GO:0007015 | actin filament organization | biological_process |
| GO:0032587 | ruffle membrane | cellular_component |
| GO:0043005 | neuron projection | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0045202 | synapse | cellular_component |
| GO:0030054 | cell junction | cellular_component |
| GO:0030659 | cytoplasmic vesicle membrane | cellular_component |
| GO:0008289 | lipid binding | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU28574 | lncRNA | upstream | 1965 | 9468544 ~ 9471574 (+) | False | G24114 |
| TU28575 | lncRNA | upstream | 1965 | 9468544 ~ 9471574 (+) | False | G24114 |
| TU28576 | lncRNA | upstream | 1965 | 9468544 ~ 9471574 (+) | True | G24114 |
| TU28580 | lncRNA | upstream | 39328 | 9433975 ~ 9434211 (+) | True | G24118 |
| TU28567 | lncRNA | upstream | 45322 | 9426857 ~ 9428217 (+) | True | G24108 |
| TU28605 | lncRNA | downstream | 19908 | 9518666 ~ 9518987 (+) | True | G24137 |
| TU28635 | lncRNA | downstream | 89539 | 9588297 ~ 9588508 (+) | True | G24159 |
| TU28636 | lncRNA | downstream | 90560 | 9589318 ~ 9589585 (+) | True | G24160 |
| TU28638 | lncRNA | downstream | 92670 | 9591428 ~ 9591646 (+) | True | G24162 |
| TU28656 | lncRNA | downstream | 113631 | 9612389 ~ 9612613 (+) | True | G24177 |
| XM_026918709.2 | mRNA | upstream | 5749 | 9454676 ~ 9467790 (+) | True | nudt3b |
| XM_026924732.2 | mRNA | upstream | 19939 | 9450933 ~ 9453600 (+) | False | hmga1b |
| XM_026924814.2 | mRNA | upstream | 19939 | 9451087 ~ 9453600 (+) | False | hmga1b |
| XM_026925509.2 | mRNA | upstream | 377797 | 9088734 ~ 9095742 (+) | True | abhd14b |
| XM_026926274.2 | mRNA | upstream | 410041 | 9050896 ~ 9063498 (+) | True | si:ch211-161c3.5 |
| XM_034297897.1 | mRNA | downstream | 41850 | 9540608 ~ 9570519 (+) | False | anks1ab |
| XM_026928006.2 | mRNA | downstream | 41850 | 9540608 ~ 9568527 (+) | True | anks1ab |
| XM_026928013.2 | mRNA | downstream | 41850 | 9540608 ~ 9568527 (+) | False | anks1ab |
| XM_026928022.2 | mRNA | downstream | 41852 | 9540610 ~ 9568527 (+) | False | anks1ab |
| XM_026928030.2 | mRNA | downstream | 41852 | 9540610 ~ 9568527 (+) | False | anks1ab |
| TU28587 | other | upstream | 19077 | 9450925 ~ 9454462 (+) | False | hmga1b |
| TU28588 | other | upstream | 19077 | 9450925 ~ 9454462 (+) | True | hmga1b |
| XR_003402786.2 | other | upstream | 3720435 | 5717530 ~ 5753104 (+) | False | rbl1 |
| TU26124 | other | upstream | 4264675 | 5208346 ~ 5208864 (+) | True | G21901 |
| TU26030 | other | upstream | 4384961 | 5088134 ~ 5088578 (+) | True | G21835 |
| XR_004577034.1 | other | downstream | 93183 | 9591941 ~ 9596854 (+) | False | LOC113532547 |
| TU28879 | other | downstream | 396487 | 9895245 ~ 9907171 (+) | False | LOC113530691 |
| TU29055 | other | downstream | 699208 | 10197966 ~ 10198455 (+) | True | G24500 |
| XR_003403740.2 | other | downstream | 1255757 | 10754515 ~ 10754622 (+) | True | LOC113537259 |
| TU29627 | other | downstream | 1407442 | 10906200 ~ 10908572 (+) | True | G25029 |
